Gene detail

Detailed information of ENSDLIP00000010916.1 in Diadumene lineata

Genomic Location: chr15:1871716...1879608
NR annotation: XP_020900755.1, S-adenosylmethionine decarboxylase proenzyme isoform X3 [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSDLIT00000012096

GGACTGTGGGTAGAATTGTGAATCGAACTCAGCGTGAGGCTGTGTCACGAAAAAGTTGTTGTGTTTTGTCGAGTTTCTTCCTCACTTGGGAAACTCAAGTCTGCATGTATTGTAAGTCTTTGGAACCTGTGCTATCTATGCTAAAATGTGCGAGGTTGACTTTTTTGAAGGCCCGGAAAAGTTGATGGAAATTTGGTGGGGTAGTAGGATAGCTTCGTCAGACAAGTCTGGAGATTTGAGAACCGTTCCAAGGGAAAGATGGGAGAAGATCCTTGCTTTGGTAAATTGCCAAATCATCAGTGAGAAAAGAAATGAGGACATGATCGCGTACTTGCTGAGTGAGAGTAGCATGTTTATATCCAAGACACGTGTAATTGTCAAGACGTGTGGAACAACCACCCTACTGCATTCTGTTAAACCGTTGTTAGAGTTAGCAAAACAGGAATGTGGACTGGTTGAGATACAGGACTTCTTTTACTCAAGGATGAGTTTTCTTGAACCAGACTTGCAGCAAGCTCCTCACCAAACATTCAATCAAGAGGCCCACTTGCTTGACCAGCTATTCCAGGGTGGCGCAGCGTACTCTTTGGGTAGAATTAATGGACGTGGCTGTTGGTATCTGTATACCATTCACAATGAAGCACCAGGTGTTGAAGAACCAGATCAAACCCTAGAAATACTAATGCAAGACCTTGACCCAGAGACTATGAAgaagttttacaaaaataaagatacagaCGTCAAGGAAGTCACCGAGGTTTCAGGTATAAAAGACTTTGTTCCTGGAGCTATCATTGACGATGCGTTATTTGATCCCTGTGGTTACTCAATGAATGGTCTGATGGATGTAAGTAATGATgataGTTATTTTACTATTCACATCACTCCACAAGAACATTGCTCTTATGTTAGCTTTGAGACTAACCTGAAGTTGacTTGTTACAATGAATTGATCAACAAGGTTCTGGCTGCTTTTAAACCAGGGCGCTTCCTGATGACTTTGTTTGCTAATGAAGGAGCACCTTGCGGACAATCAATTAACACTTTTGATGGACACATTGAAGGCTACAAGAGAAATGATTTACAACTCTGTCAGATGAAGGGTTATAATCTGACTTACGGACATTTCAAGAGAGTCCCAGAATGCATCGGAAAAGCATGAATAgctaaaaaatgtattatataaagttaaataattatgtaaaGGCCAGAAAAAGACTAGTTTGCACTCAGTGATTCTCATACAACCACCATAACCAAGTTGCAACCTGCAGTGCAAACAGCCTGCAATTTTTTAAGTGAAAATCACTTATCATCAGATAAAGCAATGTTTTTGTAGATGCACAAAATCATAAGGTCAAAATGTGgttagaacaaaaacaaaaacaaaaacagacaaaatcAAGTTCATGATCGTTACCAAATAAATGGTAGCAGAGGTCAGAGAGAAGCTGCACTTCCATCCTCAACCTCTTTCAGACATTCTTGGTAGAGCAAACACAgtaaaaccatgaaataaaacaattagaaactaaatactagagtgcaaagactaaatgtgtgcaacagttgtcactatttaaaTGGCAAATAgcaataattaaacaatagaaaacaatagaattagcacaaaacagcactatttagtggtatttttgttgcacacttttagtgtgtgcactctaacaaACAGTAGCTATTTAGCAagtatttgtcactatcacacaaccagaacacaataacAAGATAACAAATAGTAAAGTTCTGGTAATtgatagtatttagtttgtttttattccatGGTTTCTCTGCATTTGCGACCGTtgtaaaaacattgaaaataaacacaacTTGATATGaacctttttgaaaattttactTCCTcagtttataataattttatttttataacatttcaaTGTTGCCTATACAAAATTATtccttacatttttttctgacttttcttgttatttaataatatagaTTGACTTTTTAACTTTAAACTTGAGTACATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P79888	S-adenosylmethionine decarboxylase proenzyme OS=Xenopus laevis OX=8355 GN=amd1 PE=2 SV=1
P28918	S-adenosylmethionine decarboxylase proenzyme OS=Mesocricetus auratus OX=10036 GN=AMD1 PE=2 SV=1
P17708	S-adenosylmethionine decarboxylase proenzyme OS=Rattus norvegicus OX=10116 GN=Amd1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003295 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01536 all species →	SAM_decarbox	Adenosylmethionine decarboxylase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048283 all species →	Family	S-adenosylmethionine decarboxylase-like	Interproscan
IPR001985 all species →	Family	S-adenosylmethionine decarboxylase, eukaryotes	Interproscan
IPR018166 all species →	Conserved_site	S-adenosylmethionine decarboxylase, conserved site	Interproscan
IPR016067 all species →	Homologous_superfamily	S-adenosylmethionine decarboxylase, core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11570 all species →	S-ADENOSYLMETHIONINE DECARBOXYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004014 all species →	Molecular Function	adenosylmethionine decarboxylase activity	Interproscan
GO:0006597 all species →	Biological Process	spermine biosynthetic process	Interproscan
GO:0008295 all species →	Biological Process	spermidine biosynthetic process	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01611	speD, AMD1; S-adenosylmethionine decarboxylase	EC:4.1.1.50	Arginine and proline metabolism	ko00330	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.