Gene detail

Detailed information of ENSDLIP00000014899.1 in Diadumene lineata

Genomic Location: not available for this species
NR annotation: XP_020911163.1, sodium channel and clathrin linker 1 [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Sequence

CDS

ENSDLIT00000016366

ATGAGCAGAATGGATTCTTTGTCACAAAATGATGAGGGATATGTGAATTTTTTACAAGATCAAGTTAGACGATTAAACGCAGTTTTGAATGAATACCAGAAGAAATATCTCCCAGTAAAAGAGCCTAAAATTAAGgcTGATGAGCCCATTCCACCTTGGATCACAAATCAAAGCATTGTATCCCCATTACTTATTGAATATGATGAAATCATCAAGAAACTACAAGAGCAGTTGAGATTTCAAAAGgaTAACCTAACACACTTAAAACAGAGAACTGATAGAGTGGTACAAGAAAATGCTGGGCTACATGACCAACTCCGTCGCAGTATTGAAAGTCAAATGGAAGTCCTTAAACGAGGGGAAGGCTCTAATATGGACAAAGAACTGATTGATAAGATGCAATTCCAGCTAGAGTTGATTAGTAAGGAAAAGGATAGCTACATTGAGAtgtgggaaagtgctacaaaggAACTTGAAAGATTACAAGATATTGATAGGGAGAGATCAGCTGAAATTAGACTCAAGAGCAAACAAGTAGCCTCATTACAGAATGATTTGAAGAAAGCAAGACACTTAGCAGAAAGTCTTCAGCTAGAgatcaagaaaatgaaaacgGAATATGATAAGTTTCTGTCAACAGCACACACTCAAGATCAGGAAATTGATTCAACAAGAATAGAGTTAAAAAAATGCAAAGCTGAGCTCAAATCAAGTAAAGTTCAAATTGATGAGTTTAGAAAAAATGTTGAACTCTTGGaaaagcaaatgaaaacaaggaatcaagaaaaaaactcAAAGAAACCACAAACATCAAGTGATGCACAGATTGAAGAACTtcaaacatttgcatttgaacTAGAATCACGACTCAGTGCAATGATCAAAGAAGTTGGAAGACTGAACAGTGAAAAAACAACTCTCGAAGAACAACTAGAAACACTCCAAGCCAGGAAtaatGAAATGGAGAAGCGTGAATTTGATGCAATTTCACATGTAAGAGACAGTGTCCAGATGGTTGAGAATGCTATATTGGAAAGAGATCAGGCATTGCTTCGTGAACAACAGAAGAGTCAAGAAGCAAATCGATTACAAGAAGTCATCAACAAACTGCTGAAAGAAGCtggaaaaagaacaaaagatgAGGTTGATGCAATAAGGAATCAGTGCAATAAAAATTTACAGAAACTAATGGAAGAAATTCAGTATCTTGAAGTGGAAGGAGCCGAGAAACAAGCCCAACTGGAACGAGCCATGAGAGAGAAATCTGCAGTTGAACAAGAATTAGAGAAGGTGTATCGCGAAGGTCCATCTGAAATAGAACGTGTTGGACTAACATTCGAAGAACTCCAGAAAAGAATTGGAGCAGCAGAGAGAGCGCGAGACGAGGCTTCTATATACAATGACAATCTCTCTGCTACAATAAAACGACTAGAAAGCAAGCTTGAACAGGAGAAAACGCAACTAAACGCCGAGAATGTTGAGCTACGAAGAAGAATTAAAAAGTTAGAAACCGAATCAGAAGAAATGTCTGAAAATAGATTGCAGTTAGTTGATGAGATTGACAAACTAAAACGTGAAGTACTAGCGTCAAAACAGGCAAAAGAAGCTGCAGAACACGAAAGGGATACTGAGatTGCTgctcagaaaaaaaagtttgagttgaaagaaaaagatttTGATCTGAAGCTTCGAGGTGTGGAAGAAATGAACcgcaaatcaatcaatgatcttCGAGATATGCTCAACACCCAACAAAAGATAGGGATTCAGTGGAAAGAGGAGACAAAATCTTTGACTGAAAGGTTCGAGAAAACTGTCAGTGAATTAAGACAGCAAGTATCGATGCAGAAGAAGCGAAGTGACGAATTAAGCAGTACTTTGATGGATGAACGACACCAGGCGGAGCAGTTTAAGTCCAAGCTTACTACAGCCAAGCAAAACATCAATAAACTGCAGAAAATGGTAGCAGACGCTGAGTCGAGAGCTGAAGCAGCTAGTGCACAGGTATCAACATTACTGAGTCGCGAACGTCAGTTACTGCAAGAGCGAAAACTACTAAATAAAGAACtagaaaaactaaaactagAACGGACGAGGCCTGGGAATGGCAATAAGACACGTGATCCATCATCACGTCTGTTGAGCAATGGACTTGCAGGCGTACCTGGTCATGAGCCTGCAGTACGACTGGACGTGATGTCGCCACGCAATGAAGGTTTGTTTGGTGATTTGGACGGATTTGAAAGACGACCCGCTATAGACGACAGTTTTTCCCGTAATAGGTTTATGTTATGA

Transcript

ENSDLIT00000016366

GCCatatttcaaacttttattgAAAGACCAATGAGGATAAAATTGCATACCATGTGACATgcttgaccaatcagaatacTGTTTTGCAGCGGCCGACAATCAAGATGGCGGCTCTTGGCGTCTTTTTCGTGTTTTGTGCAGTTTTATctacatatttttcattttaattatgtATTAGGTATTCAAACTATCCCTTCATGAGCAGAATGGATTCTTTGTCACAAAATGATGAGGGATATGTGAATTTTTTACAAGATCAAGTTAGACGATTAAACGCAGTTTTGAATGAATACCAGAAGAAATATCTCCCAGTAAAAGAGCCTAAAATTAAGgcTGATGAGCCCATTCCACCTTGGATCACAAATCAAAGCATTGTATCCCCATTACTTATTGAATATGATGAAATCATCAAGAAACTACAAGAGCAGTTGAGATTTCAAAAGgaTAACCTAACACACTTAAAACAGAGAACTGATAGAGTGGTACAAGAAAATGCTGGGCTACATGACCAACTCCGTCGCAGTATTGAAAGTCAAATGGAAGTCCTTAAACGAGGGGAAGGCTCTAATATGGACAAAGAACTGATTGATAAGATGCAATTCCAGCTAGAGTTGATTAGTAAGGAAAAGGATAGCTACATTGAGAtgtgggaaagtgctacaaaggAACTTGAAAGATTACAAGATATTGATAGGGAGAGATCAGCTGAAATTAGACTCAAGAGCAAACAAGTAGCCTCATTACAGAATGATTTGAAGAAAGCAAGACACTTAGCAGAAAGTCTTCAGCTAGAgatcaagaaaatgaaaacgGAATATGATAAGTTTCTGTCAACAGCACACACTCAAGATCAGGAAATTGATTCAACAAGAATAGAGTTAAAAAAATGCAAAGCTGAGCTCAAATCAAGTAAAGTTCAAATTGATGAGTTTAGAAAAAATGTTGAACTCTTGGaaaagcaaatgaaaacaaggaatcaagaaaaaaactcAAAGAAACCACAAACATCAAGTGATGCACAGATTGAAGAACTtcaaacatttgcatttgaacTAGAATCACGACTCAGTGCAATGATCAAAGAAGTTGGAAGACTGAACAGTGAAAAAACAACTCTCGAAGAACAACTAGAAACACTCCAAGCCAGGAAtaatGAAATGGAGAAGCGTGAATTTGATGCAATTTCACATGTAAGAGACAGTGTCCAGATGGTTGAGAATGCTATATTGGAAAGAGATCAGGCATTGCTTCGTGAACAACAGAAGAGTCAAGAAGCAAATCGATTACAAGAAGTCATCAACAAACTGCTGAAAGAAGCtggaaaaagaacaaaagatgAGGTTGATGCAATAAGGAATCAGTGCAATAAAAATTTACAGAAACTAATGGAAGAAATTCAGTATCTTGAAGTGGAAGGAGCCGAGAAACAAGCCCAACTGGAACGAGCCATGAGAGAGAAATCTGCAGTTGAACAAGAATTAGAGAAGGTGTATCGCGAAGGTCCATCTGAAATAGAACGTGTTGGACTAACATTCGAAGAACTCCAGAAAAGAATTGGAGCAGCAGAGAGAGCGCGAGACGAGGCTTCTATATACAATGACAATCTCTCTGCTACAATAAAACGACTAGAAAGCAAGCTTGAACAGGAGAAAACGCAACTAAACGCCGAGAATGTTGAGCTACGAAGAAGAATTAAAAAGTTAGAAACCGAATCAGAAGAAATGTCTGAAAATAGATTGCAGTTAGTTGATGAGATTGACAAACTAAAACGTGAAGTACTAGCGTCAAAACAGGCAAAAGAAGCTGCAGAACACGAAAGGGATACTGAGatTGCTgctcagaaaaaaaagtttgagttgaaagaaaaagatttTGATCTGAAGCTTCGAGGTGTGGAAGAAATGAACcgcaaatcaatcaatgatcttCGAGATATGCTCAACACCCAACAAAAGATAGGGATTCAGTGGAAAGAGGAGACAAAATCTTTGACTGAAAGGTTCGAGAAAACTGTCAGTGAATTAAGACAGCAAGTATCGATGCAGAAGAAGCGAAGTGACGAATTAAGCAGTACTTTGATGGATGAACGACACCAGGCGGAGCAGTTTAAGTCCAAGCTTACTACAGCCAAGCAAAACATCAATAAACTGCAGAAAATGGTAGCAGACGCTGAGTCGAGAGCTGAAGCAGCTAGTGCACAGGTATCAACATTACTGAGTCGCGAACGTCAGTTACTGCAAGAGCGAAAACTACTAAATAAAGAACtagaaaaactaaaactagAACGGACGAGGCCTGGGAATGGCAATAAGACACGTGATCCATCATCACGTCTGTTGAGCAATGGACTTGCAGGCGTACCTGGTCATGAGCCTGCAGTACGACTGGACGTGATGTCGCCACGCAATGAAGGTTTGTTTGGTGATTTGGACGGATTTGAAAGACGACCCGCTATAGACGACAGTTTTTCCCGTAATAGGTTTATGTTATGATGACAGTTTGTACGACAAATATTAGCGTGTttcttataaatatttatatgatGTGTGTAGATAAATTATGTActgtataaatgaatgaataaacaaattaacaatttAAACTGAGCTTTTGAAATGATTTGTCCATTTGAACCAGTCGATGTCTTTGTAACAATCAATGTCGATCATTATTTTGTGGCCATTCTCAAAACTAGGAACGGATGACT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96NL6	Sodium channel and clathrin linker 1 OS=Homo sapiens OX=9606 GN=SCLT1 PE=1 SV=2
G5E861	Sodium channel and clathrin linker 1 OS=Mus musculus OX=10090 GN=Sclt1 PE=1 SV=1
Q8CJ99	Sodium channel and clathrin linker 1 OS=Rattus norvegicus OX=10116 GN=Sclt1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003174 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15964 all species →	CCCAP	Centrosomal colon cancer autoantigen protein family	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031887 all species →	Family	Serologically defined colon cancer antigen 8	Interproscan
IPR038911 all species →	Family	Sodium channel and clathrin linker 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35970 all species →	SODIUM CHANNEL AND CLATHRIN LINKER 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0007098 all species →	Biological Process	centrosome cycle	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0045162 all species →	Biological Process	clustering of voltage-gated sodium channels	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25400	SCLT1; sodium channel and clathrin linker 1	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.