Detailed information of ENSDLIP00000015668.1 in Diadumene lineata

Genomic Location: chr2:10879942...10884543
NR annotation: XP_020914875.1, proteasome subunit beta type-2 [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5E9K0Proteasome subunit beta type-2 OS=Bos taurus OX=9913 GN=PSMB2 PE=1 SV=1
Q9R1P3Proteasome subunit beta type-2 OS=Mus musculus OX=10090 GN=Psmb2 PE=1 SV=1
P40307Proteasome subunit beta type-2 OS=Rattus norvegicus OX=10116 GN=Psmb2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007703 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00227
all species →
ProteasomeProteasome subunitDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR023333
all species →
FamilyProteasome B-type subunitInterproscan
IPR035206
all species →
FamilyProteasome subunit beta 2Interproscan
IPR029055
all species →
Homologous_superfamilyNucleophile aminohydrolases, N-terminalInterproscan
IPR001353
all species →
FamilyProteasome, subunit alpha/betaInterproscan
IPR016050
all species →
Conserved_siteProteasome beta-type subunit, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR32194
all species →
METALLOPROTEASE TLDDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0010498
all species →
Biological Processproteasomal protein catabolic processInterproscan
GO:0005839
all species →
Cellular Componentproteasome core complexInterproscan
GO:0051603
all species →
Biological Processproteolysis involved in protein catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02734PSMB2; 20S proteasome subunit beta 4EC:3.4.25.1
Proteasomeko03051deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Diadumene lineata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Diadumene lineata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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