Gene detail

Detailed information of ENSDLIP00000016431.1 in Diadumene lineata

Genomic Location: not available for this species
NR annotation: KXJ24645.1, Transportin-3 [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Sequence

CDS

ENSDLIT00000018043

ATGGACAAACCTTCAGTCGAGCAAGTACAGAGTGTAATCAATACTTTATACTCTAATCCCGATCCTCATAATAAAGAGAAGGCGTCAGAATGGCTGGGGAATTTACAGCGCTCGATGTACGCCTGGGAGATAGCAGATCGACTTTTGATGATGAATCCGAATGTGGAGACAACTTATTTTGCTGCACAAACCATGAGAACAAAGGTTCAGTACTGTATCAACGAACTTCAACATCAACAATATGAGTCTTTGAAAGACTCCATCATTACACACTTAACAAATCTACACAATAGCTCACAAGCTATTATTACTCAATTATGTTTAGCCCTGGCTGACTTGGCTGTTCAGATGCCACAGTGGACTAATGTAGTCACAAACCTATACCAAAGATTTGGATCATCTTTGGAAAGTTTACCAATTTTATTAGAAATTTTAACTGTTTTACCTGAGGAGGTTGATAGTCATCATTTGAGAGTAGGATCCAATAGAAGAGAAGGAGTTTTAAATGATTTAAGAGGATCAGCACAAACTACACTTCATTTACTGtcaACCTGTCTAGAAAAATGTCCTGCTTCAGAAAAAATAAGAGTGAAGATATTCCGCTGTGCTGGAAGCTGGATTATACTTGGTGCCTTCCCCCCTTTAGAAATTGCTAATAGCAAACTTTTATCTGTgacatttgatattttaTCTAATACTTCATCAGATGTTAGTGATGTTTTACATGAAGCTGCTgctgattttgtttgtaatgCACTGTATACAGCTGAGgATATTGCTAAGCAACATCCACTTCCTGAAACTTTGTTCAAAAAAGTGATGATGCTCCCCCCTGCATATGAAGCAGCTGTAAACGAAGAAGACTTTGATAGatcTTTAAATTTATGTCGAGTATTTACCGAAACTGGTGAATCATTTCTGGAGCAGATTGTGCAAATGCCTGGAAAGAATCTTGGTGATCTTAGGACTTTGTCCATCATATTAACCTGTGTTCAGCATAATCAATATGAGATTGCTGAAATAACCTTCAATTTCTGGTACCGCTTGTCAGAAGCTATATTTAAACTCCAGGATCAATCTCAGATAGAAATATTTAAACCTTATATTGCGAAGCTTATTGAAGCTCTTAGTGTGCACTGTAGATTAGAACCAGACCATGATAACATCCCAGAAACTGAAAATGAGTTTGGAGAATTCAGAGAACGAGTAGCTGATCTTATAAAAGATTGTGTATTTATTGTTGGCTCAACCAATTGCTTCCAACAGATGTATGTAAATCTTGTCAATCAAAGTACCCAATCATGGGAGATATCAGAAGCAACACTCTTTGTCATGGCAACCATTGCACGATCTGTGAGCCTAGACTCAGAGCTGGTGAGCCAGTTTCTTCCTGTACTGTTAAACCTTCCTGCTAATGTACATATTGCAGTTAAATATACCAGCATTAAAGTCATCGGCGAACTGGCTGAATGGATTGAAAAACATCCGGATTCTTTAGATCCATTGATGCAGTTCTTACTAACATCAGTACAGACCCCTGGTTTATCTTCTGCTTGTGCCTTCGCAGTAGAGAGTATATGTATGGCTTGTTTTAATGAGATGGGTAGACACTTTGACGTCCTAGCACAGGTTGTCGCAGCAACAGATTCACTGAGTATATCAGGCGAAGCAACTATAGGGATGATTAAAGGTGTCAGTAAGATTCTTGAAGGAGTTGCCTCGCCAGACAAAGTTACTAATGGTTTTAGACGTCTGTGTAGTACTCATATCAACGCCTTATCACAGATTGCCAATGCTCAGGGATCCAGTGCTGACCCCATATTATCACTGGATAGATTAGCGGCAGTATTTAGGTTTACGAATTGTGAAGTTGATGAAGGCAAGCAGCATCCTTGTCAAGAAGTTGTGGAAGAGCTTTGGCCAGTTTTGTCATCTATATGCAATAAATATCAAACTGACAACAAAGTCATGGAGCGCTGTTGTAGATGTATAAGGTTTGCAATCAGATGTATCGGCAAGTCAGCAAGAAACCTACTTACCCCATTAGTACCACAGatGGTTCAGATATATACAACCCACAAACATTCATGTTTCCTCTACCTGGCTAGTATACTTGTTGATGAGTATGGTGATGACGAACAATGTATTCCAGGACTTCTTGAAATGACTAAGGCTATGGGTTTCCAAACACTACAGCTTCTAAGTGGATCAGAGGGACTAGTGAACCACCCAGACACCATGGATGATTTGTACAGACTCACATCAAGATGTCTTCAGAACTTTCCTCTGCTTTTCTTGCGGTGCGATATTGCAGTCCCATCAATCCAGTGTGCCATAGCAGCATGTACATTACAGCACAGAGAAGCAAATCAATCAGTTATGAAGTTCCTTAGAGAGATGGTCCATGCTGGCTCACAAACAGAAAATGCACCTCAGGATGAATGTGCTTCTCTTGTCCGTCAAATAATGTCTGCTCATGGTCAAGATTTGGTTAAAGGTCTTATCAGTGCATGTGCTGGTGGTATTCCGACCTATATGATACCTGAAGTTGCTGATGTTCTCTGGGAACTGCTATCATCTTGTAGACAAGAAACGCTTGACTGGGTAGCTCAGGCACTCCAGACGTTACCTACACATGCAGCACCAGGACATGTTATAGCAACACCAGAGCAACTGCGACAATTCCACCATTCACTATCAAGtTCCAGATCCCAGAATGAAATATGGAAAGCATCAAAGGTCTTTTCAAGACTGTTCATGTAA

Transcript

ENSDLIT00000018043

GAACTCGAGcatacaagaaaacaaaatggcgcaGGCGGGATGATGCCAAAGCAAGAAGTGTTGAAATTAACTTTTTAAACCATGGACAAACCTTCAGTCGAGCAAGTACAGAGTGTAATCAATACTTTATACTCTAATCCCGATCCTCATAATAAAGAGAAGGCGTCAGAATGGCTGGGGAATTTACAGCGCTCGATGTACGCCTGGGAGATAGCAGATCGACTTTTGATGATGAATCCGAATGTGGAGACAACTTATTTTGCTGCACAAACCATGAGAACAAAGGTTCAGTACTGTATCAACGAACTTCAACATCAACAATATGAGTCTTTGAAAGACTCCATCATTACACACTTAACAAATCTACACAATAGCTCACAAGCTATTATTACTCAATTATGTTTAGCCCTGGCTGACTTGGCTGTTCAGATGCCACAGTGGACTAATGTAGTCACAAACCTATACCAAAGATTTGGATCATCTTTGGAAAGTTTACCAATTTTATTAGAAATTTTAACTGTTTTACCTGAGGAGGTTGATAGTCATCATTTGAGAGTAGGATCCAATAGAAGAGAAGGAGTTTTAAATGATTTAAGAGGATCAGCACAAACTACACTTCATTTACTGtcaACCTGTCTAGAAAAATGTCCTGCTTCAGAAAAAATAAGAGTGAAGATATTCCGCTGTGCTGGAAGCTGGATTATACTTGGTGCCTTCCCCCCTTTAGAAATTGCTAATAGCAAACTTTTATCTGTgacatttgatattttaTCTAATACTTCATCAGATGTTAGTGATGTTTTACATGAAGCTGCTgctgattttgtttgtaatgCACTGTATACAGCTGAGgATATTGCTAAGCAACATCCACTTCCTGAAACTTTGTTCAAAAAAGTGATGATGCTCCCCCCTGCATATGAAGCAGCTGTAAACGAAGAAGACTTTGATAGatcTTTAAATTTATGTCGAGTATTTACCGAAACTGGTGAATCATTTCTGGAGCAGATTGTGCAAATGCCTGGAAAGAATCTTGGTGATCTTAGGACTTTGTCCATCATATTAACCTGTGTTCAGCATAATCAATATGAGATTGCTGAAATAACCTTCAATTTCTGGTACCGCTTGTCAGAAGCTATATTTAAACTCCAGGATCAATCTCAGATAGAAATATTTAAACCTTATATTGCGAAGCTTATTGAAGCTCTTAGTGTGCACTGTAGATTAGAACCAGACCATGATAACATCCCAGAAACTGAAAATGAGTTTGGAGAATTCAGAGAACGAGTAGCTGATCTTATAAAAGATTGTGTATTTATTGTTGGCTCAACCAATTGCTTCCAACAGATGTATGTAAATCTTGTCAATCAAAGTACCCAATCATGGGAGATATCAGAAGCAACACTCTTTGTCATGGCAACCATTGCACGATCTGTGAGCCTAGACTCAGAGCTGGTGAGCCAGTTTCTTCCTGTACTGTTAAACCTTCCTGCTAATGTACATATTGCAGTTAAATATACCAGCATTAAAGTCATCGGCGAACTGGCTGAATGGATTGAAAAACATCCGGATTCTTTAGATCCATTGATGCAGTTCTTACTAACATCAGTACAGACCCCTGGTTTATCTTCTGCTTGTGCCTTCGCAGTAGAGAGTATATGTATGGCTTGTTTTAATGAGATGGGTAGACACTTTGACGTCCTAGCACAGGTTGTCGCAGCAACAGATTCACTGAGTATATCAGGCGAAGCAACTATAGGGATGATTAAAGGTGTCAGTAAGATTCTTGAAGGAGTTGCCTCGCCAGACAAAGTTACTAATGGTTTTAGACGTCTGTGTAGTACTCATATCAACGCCTTATCACAGATTGCCAATGCTCAGGGATCCAGTGCTGACCCCATATTATCACTGGATAGATTAGCGGCAGTATTTAGGTTTACGAATTGTGAAGTTGATGAAGGCAAGCAGCATCCTTGTCAAGAAGTTGTGGAAGAGCTTTGGCCAGTTTTGTCATCTATATGCAATAAATATCAAACTGACAACAAAGTCATGGAGCGCTGTTGTAGATGTATAAGGTTTGCAATCAGATGTATCGGCAAGTCAGCAAGAAACCTACTTACCCCATTAGTACCACAGatGGTTCAGATATATACAACCCACAAACATTCATGTTTCCTCTACCTGGCTAGTATACTTGTTGATGAGTATGGTGATGACGAACAATGTATTCCAGGACTTCTTGAAATGACTAAGGCTATGGGTTTCCAAACACTACAGCTTCTAAGTGGATCAGAGGGACTAGTGAACCACCCAGACACCATGGATGATTTGTACAGACTCACATCAAGATGTCTTCAGAACTTTCCTCTGCTTTTCTTGCGGTGCGATATTGCAGTCCCATCAATCCAGTGTGCCATAGCAGCATGTACATTACAGCACAGAGAAGCAAATCAATCAGTTATGAAGTTCCTTAGAGAGATGGTCCATGCTGGCTCACAAACAGAAAATGCACCTCAGGATGAATGTGCTTCTCTTGTCCGTCAAATAATGTCTGCTCATGGTCAAGATTTGGTTAAAGGTCTTATCAGTGCATGTGCTGGTGGTATTCCGACCTATATGATACCTGAAGTTGCTGATGTTCTCTGGGAACTGCTATCATCTTGTAGACAAGAAACGCTTGACTGGGTAGCTCAGGCACTCCAGACGTTACCTACACATGCAGCACCAGGACATGTTATAGCAACACCAGAGCAACTGCGACAATTCCACCATTCACTATCAAGtTCCAGATCCCAGAATGAAATATGGAAAGCATCAAAGGTCTTTTCAAGACTGTTCATGTAAGGAAGTAGAGCAAATGAACATCAATGACTGCACAACTCCATGGCATTTTCATCACTGCATTTCCAGATATTTCAACCAAGATGTCATAATAAATTCTTATGCAATTTAGTAAAAGCTAAAGTCTGTTGAAGTTTGTTCATGTACTATTGCAAGTGGACAACGCTGCAGAAAATGCTGAGAGAGATGAAGTTTCTTCATGTACATTCGCCAGTGAACAACAATGAGGAAAATGCTGAGTAATTTGAAGATTCTTCATGTACTATTATAGTGAAAATCCTGAGTGGGACAATCAATGCCAATGCAATGCAGGAAAAACTGTGGTCTGCTTAAATACTGTTCACGAAGACTGCCTATGAACAGCTATGACAGTTCAGTGTGGATATATGATAACTGTATCCTCAGGAGTTTCATATTCCTAGTTATTTGGTTGTGAAATGTTGTAGAAAAGCTATGGTTGCTGACGGTACAAACAATGAACTGCAATAAGCAATGCAATATTGATCGATATCTATATATTGATCTAGAGCACCAGCGAACATCAacatagataaataaatgcacAAAGCTGCCATACAATGGACAGTCAACTTCACATGGATTCTTAGTTGTTTGGACACCAGCAGCATAACCTTCTCAATGCTTTGTCGAGAGAAGTTACATGTTCGATCTTAAAGAATGCGAAATTGCTCTATTAAACTACAATAAACAGTTACAAATGCAATGCAACATTTCAAATGGATGGACATGATTCTTTAAGAAACTTCTCGATTTTTAAGCtgtgttattttaaaaatatttcattccaGCACCAAATCTGTATGGGTCAATTGTACAATCCCTGGATAGAAGTGAAGTTATCTACTGGAAAGGTAGAAATCAAACTGCAATACTCCTAAAACGCTTGCAATTTTAAGTTGTAATTTTTGTGTACATCGTGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P2B1	Transportin-3 OS=Mus musculus OX=10090 GN=Tnpo3 PE=1 SV=1
Q9Y5L0	Transportin-3 OS=Homo sapiens OX=9606 GN=TNPO3 PE=1 SV=3
Q99189	mRNA transport regulator MTR10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MTR10 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006302 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18806 all species →	Importin_rep_3	Importin 13 repeat	Repeat	Interproscan
PF08389 all species →	Xpo1	Exportin 1-like protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040520 all species →	Repeat	Importin 13 repeat	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR051345 all species →	Family	Importin beta-like nuclear transport receptors	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR013598 all species →	Domain	Exportin-1/Importin-beta-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12363 all species →	TRANSPORTIN 3 AND IMPORTIN 13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15436	TRPO3, MTR10; transportin-3	-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.