Gene detail

Detailed information of ENSDLIP00000016558.1 in Diadumene lineata

Genomic Location: chr16:9022464...9028207
NR annotation: XP_020902747.1, amino acid transporter AVT1J [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSDLIT00000018188

TAATACCCATTTTAAGTCGTCACGGCTCATATATATCATGTCCATAATCTTGTGCTAGGTTTAGCGAAGGTTTAGCGAATGCAAGCAGCCTTACGTTACAATGTAAATATTCATGTTGCTACGCGTCAAagatcaaaaatatcaatttacgCTACAGCGATGCATTACAGACATTAACACCATATGACCCCTAAATGACATTAGCTATCTTCCTGTTTGAAGCAATGCTTTGTCTAAGAAACTCAACCTAAAAATAGGATTTCATGCTAGTTCAACAACTTCTACAACTTTAAACCACTATGCCTGAGAAATCAATCACCAATCGCGGTGAGCTTCTGCACCCAAGTTTCGTCCATAGAGGAGAAGCAACTGAAGCAACACAACACATAACAGGCTCCAGCTCTAGCTTGTACAACGAAGATCCTGAAATTATCGACCGAGGAGATGGTGCGCCAGTTTTAAGCGGTCTTACTGTCTTCACTGCATCTGTATTTGTCATAGGAGAGATGGCTGGCAGTGGAGTAGTCGCTCTACCTTCTGCAATGGTAAACGCTGGAGTTATTGGCTTTGTAATGTTGGTGCTTGGATGTCTAGCTTCTGGATACTGTGGGGTAGTGTTGGCTCGGTCTTGGACTATTTTAAGAGCACGCCATCCGGAATATCAACAACATGTACGAGAACCATACCCTGCAATTGGAAGAAAAGCAGTTGGAAAATGGGGTGCGATAGCTGTCAATATTTCTATCAATATCACCCTTCTAGGAGTGTGCATTGTGTTCTTAATCTTAGCTTCACAAAACCTCAACAAGCTAATAACAGCCCACAGCGATGTACACTTTCTGAAAATTGGCAATAACTCACTACGCATTTGGATACTGATATGTGCCGCTGTACTGCTGCCATGCTCGTGGCTTGGTACCCCTAAGGAGTTCTGGGCAATAGCTATAGGCGCCAGTAGTGCCACAGCTCTTGCTTGTCTGCTAATATGTATCGCTATTGGTATTGAAATGCCCAGTAATGTCAGTGAAGGACCACAGAAGGATGTCTCATTCTTATCGTTTTTCTCGGCATTTGGTACGATACTGTTTTCATTTGGAGGTGCGTCTACATTCCCAACTATTCAGACCGATATGAAATATCCTGAACGATTCCCATTATCAGTGGTATTTGCTTATATTGTTGTCCTATCAATGTATCTTCCAGTATCGTTATTAGgATTTTTCGCATACGGAAACGCAGTTGATGACAACATTCTTCTAACGATTTCACACGATAAATCCAAGCCAATCTCAGTGATAATAGACATCGTGCTGACCTTGATAACGCTGCATCTTTTATTTAGTTTCGTGATTGTCTTGAATCCTGTTTCACAACATTTTGAGGAGTATTTCAACATACCAAAGTCGTTTGGCTGGAAACGTTGCTTGCTACGTACTGGACTTATGGTAGTGATTCTCGGTGTGGCAGAACTTATCCCTAACTTTGGACCAATCCTATCGCTGATCGGCGGTTCCACAGTAACATTACTTACATTTATATTCCCGTGCTGGTTCTACTTAAAGATACAGAAGAACATACCACTCCACACTAAAGCTATCTTATGCGAACTGATTGCCATAGGGATAGTCGGAGGGGTGGCTTCAACGTATTCTGCAATAGACGCAATCAGAAAAACGTTTAAACTGTAGTTAAGAATATATAGATTTGATGTGGcgttttagaaatattttatgtaTATCAGTACTGTTAGTTAGTCGAGgtgtagagtgcacgcactaaaagtgcgcaacataaatacaactaaatagtgctattttatgctaattctattgtcttcttttgtttaattagtgctatttagtgcTACTAAATaatgtgtgcactctataatcTAAGGGATTTACATTAGATAAAGGGATAgagctagagtgcacgcactaaaagtgtgcagcataaataccactaaatagtgctattttatgctaattctattttttttcttttgtttttaaacaaaaattaaatctaaaaaattaaaattagtgctatttactactaaatagtgaccactgttgcacacatttagtgtttgcactctacaacGTGTATCTAAAAATAAAAGGCAAACTATTGTTAATCACGTTTTAAGTTAATTATAACAGATTTGGCGTTTCTCCAGAGCATAAATCTTACGActtcttgtatttttttgttttcttagtaCAGTTAAATTCCAAATCCCgggcttttttatcaatttagaGTTACACTTTATCGATAAAGGTAGGTAGTTAATGACTTTTAGGAATATTATGAATTGGAAAGGAAATAAATGATTACTAATCCAGTTTGCTAAGTTGTGTACTCCATCTAATATGGTGGCCAAGGGGGGTCATTGATCGCGGAACGTTCATgaaagttttcattttacgAATTCACGtttcacaaattaaattaaaaatttaattaaCATATAACTATGCGCAGTTTCATTTAACATAACATACCAAAACGTTTTAGAAAAGGATACGTCTTGACAGAGCTGAGAAATGCTATTTTTGGCTGGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O22719	Lysine histidine transporter-like 3 OS=Arabidopsis thaliana OX=3702 GN=At1g61270 PE=3 SV=2
Q9LRB5	Lysine histidine transporter 2 OS=Arabidopsis thaliana OX=3702 GN=LHT2 PE=1 SV=1
Q9FKS8	Lysine histidine transporter 1 OS=Arabidopsis thaliana OX=3702 GN=LHT1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002079 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01490 all species →	Aa_trans	Transmembrane amino acid transporter protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013057 all species →	Domain	Amino acid transporter, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48017 all species →	OS05G0424000 PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003333 all species →	Biological Process	amino acid transmembrane transport	Interproscan
GO:0015171 all species →	Molecular Function	amino acid transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15015	SLC32A, VGAT; solute carrier family 32 (vesicular inhibitory amino acid transporter)	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.