Gene detail

Detailed information of ENSDLIP00000016903.1 in Diadumene lineata

Genomic Location: :...
NR annotation: XP_020907505.1, glutamate receptor ionotropic, NMDA 1 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSDLIT00000018581

ATGTTAACTTGGACTTTTTCAAGTTGTATAGTTCTTGTTTTTCTCGTTTCGCTTGAGCGAAGTTTTGCAACAACAAAGTATATTAACATTGGAGCGATGCTTTCGTCTTCAAAATCGGAAAACATTTTCGAGCAAGCTGTCTTGAGAATTAACCACAACAGTACTATGGCTATTAATGGCCTTCATCTTAACACGACTGCTTCGATTCTCAGTTCGAATCCTATTCGATCAGCGTTGGATGTTTGTGACAGCATAATAACAAAAAGCGTTCATCTTTTAGTGGTTGGTAATTCTCTCGATAAACCGGACCCACCGATAGCTATATCGTATGCTTGTGGGTTTTATAATATCCCTATTATTGGAATAACTGCCAGAGAGTCAATCTTCTCCGACAAGACAATCCACAATTATTTTCTTCGTACAGTACCGCCATACTCAGAACAAGCTGAAGTATGGATGGGGTTACTTAACCATTTCAAATGGAATAAGGTGATACTGCTGACCAGCAATGACCAGGATAGTCGGGCGATCATCACACGGTTTACTACTATGGCTGAGAAGAAAGATATCAAGATAGAGAAGACAGTCATGTTTCCCACTGGTACTGTCAATGTCACGTCATATCTGAAAAAACTACAGACAACACAATCCAGGGTGATTCTGTTTAGTGCCAGTGGTTCAGATGCAGCAGTGGTCTACCACTATGCTACATTGCTATCAATGACCAAGAGAGGATTTATTTGGATAGTAACACAACAAGCCATATCAGGTCCAGCTAAAGACAAAGTACCACAAgGTGTTGTTGCTATGGAACTGGTCCACGGTGACAACGAACAAGCTCAGATCAATGATGCTGTTACCATAGCAGCAACAGCTCTTGATCGGTTAGTTGCCAGTGGCAAGAATGAAGTAGCCCCGCCTAAAAGTTTGCTTCCAAGGGTATTATATGGCAATACCGGTCAGGTATCATTCGATGATCGGGGTGATCGCAGGAATGCTAAAtacaacatcatcaataaaAAAGACTCGAACGGTACCATGGTTACTGTGGGAATGTACTATAATGGACAGGTGTCAATCAATGAGAATGACAGCATCATGTGGCCAGGACGACAGAATACTACACCTAAAGGAGTTTTTGTATCCAATCATCTCAGAGTCGTTACGTTAGTTGGTGAGCCGTTCGTGTCCGTTGAGAACGTTCCTGATAGTGGTAGATGCGAAGACCTAAACAAAGACAACAAGAAATACGTGCTATGCACTGGGCGTGCATATGGCCCTGAATTGTCGTCTGAagacaaaaacagaaataaacattgttgctaTGGTTTTTGTATCGATTTGCTGCACAAGCTTGGCGAGAAGGTGAACTTTACCTACAGTGTATCTTTATCGAAGGATGGTAGCTACGGGTCCCTACAACGTGTGAACGGTTCAGAGACTAAACGGTGGAATGGTATGGTTGGTGAGATCATTGACGGTGAAGCTGATCTCATAGTCGCAGCTTTAACTATCAACAACGAGCGAGCTGAGTGGATAGAATTCTCAAAACCCTTCAAGTACCAAGGGCTGACTATTCTTGTTAAAAAGAACCAGAGCAAAAACACACTCGACTCGTTCTTACGTCCTTTCCAAATCAACCTGTGGCTCCTTGTGCTGCTGTCTGTACATATCGTGGCTGTTATTCTATACCTGTTAGACCGGTTTAGCCCGTTTGGCAGGTTTAAACTGGCCAGGAAAGACAAGGAAGAGACCGCATTGAACCTTTCCAGTGCGATGTGGTTTTCGTGGGGTGTGTTGTTAAACAGTGGGATCGGTGAAGGTACACCTCGTAGTTTCAGTGCTCGTGTTCTTGGCATGGTATGGGCTGGTTTTGCTATGATTATTGTTGCTAGTTATACAGCTAACTTGGCTGCATTCCTGGTACTTGATCGACCCAAATCAGTGGTCAGCGGCATTGACGATCCTAATCTCCGTAACCCATCGAAGATGTTCAAATATGGCACTGTAGCAAACAGCAGTGTAGACGCCTATTTCAGACGACAAGTCGAATTGTCCTCCATGTACACCTTTATGGAGAATTACAACGTAAAAACAGACAAAGAGGGCATCGACGAGCTTAATGCATTTATCTGGGATTCACCGTTTCTGTACTATGAAGCATCCAAGAACTGTGACCTGACGACTGCTGGGGAACTGTTTGGACGATCAGGCTATGGAATAGGAATGCCTAAGgGATCGTCCTGGAGTAATGACATTTCCCTCGCTATATTAAACTTCCATGAGAGCGGTGTAATGGAGGAGTTGGAGAATCGATGGATCGACGGCAAGAAATGTCCTGAAGACAGCACATCACCGGCTACACTGGGACTTAATCACATGCTCGGTGTGTTTATCATGGTCGCCGCTGGTATCGGTGCGGgcattgtaatcatcatcctTGAAATACTCTACCACAAGCACCGTGGATGGAAAGAAGAACAGAAAGACCTTGCTAAGAAAACTACAGATAAGTGGCGAGCAAATATCATGCTTATGAAGCGAGACCGATCGACAACCCAGCCCAATGGCGTAGGCAACTCAGAGAATAATGATGGAGTTGGGATATCACGTCGAAATCCTATATATTCACCTGAGAATCCTAATGAAACTGCTTTTACATATAGCTGA

Transcript

ENSDLIT00000018581

Protein

Uniprot

Uniprot term	Description
P35439	Glutamate receptor ionotropic, NMDA 1 OS=Rattus norvegicus OX=10116 GN=Grin1 PE=1 SV=1
P35438	Glutamate receptor ionotropic, NMDA 1 OS=Mus musculus OX=10090 GN=Grin1 PE=1 SV=1
Q05586	Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens OX=9606 GN=GRIN1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10562	CaM_bdg_C0	Calmodulin-binding domain C0 of NMDA receptor NR1 subunit	Domain	Interproscan
PF10613	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan
PF01094	ANF_receptor	Receptor family ligand binding region	Family	Interproscan
PF00060	Lig_chan	Ligand-gated ion channel	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018882	Domain	Calmodulin-binding domain C0, NMDA receptor, NR1 subunit	Interproscan
IPR019594	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan
IPR028082	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR001508	Family	Ionotropic glutamate receptor, metazoa	Interproscan
IPR001828	Domain	Receptor, ligand binding region	Interproscan
IPR001320	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR049872	Domain	Glutamate [NMDA] receptor subunit 1-like, ligand-binding domain	Interproscan
IPR015683	Family	Ionotropic glutamate receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18966	IONOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015276	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05208	GRIN1; glutamate receptor ionotropic, NMDA 1	-	Ion channels	ko04040	deepkoala