Gene detail

Detailed information of ENSDLIP00000017458.1 in Diadumene lineata

Genomic Location: not available for this species
NR annotation: XP_020905095.1, beta-glucuronidase [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Sequence

CDS

ENSDLIT00000019135

ATGATTAAGTTCATACTTcatttaattctatttttgacCTTTTATCGTTCCCAGCTATGTATTGGTATATTTCATGGATCACTTGGTAATGGAATGTTGTATCCACGTGATTCTGAATCTCGTGAATCCAAATTCTTGGATGGTATGTGGAACTTTAAAGCCGACACTTCAGTCCGCCGATCGGAAGGATTTGAACAGATGTGGTATAATGGTCCTTTGCATCAGGCAGGTGAAGTCATTGCAATGCCAGTTCCTTCCAGTTATAACGATATCACAGAGCTAAGGTGGCTAAAAAATTTCGTTGGCTGGGTTTGGTATGATCGAACATTTTACGTCCCTTCATCGTGGGCCGTAAACTATCGCTTGTTGCGAATTGTATTGAGGTTTAACAGCGTCAACTATTATTGTAAAGTGTGGCTAAATGGTCGTGAAATCACAAGTCATGAGGGCGGTCATTTACCGTTTGAAGTGGAAGTAACAAACTATTTAGATTATGGTGGAGCTAACAGACTGACAGTTGCAGTTAATAACACTCTAACGCGCTTCACTGTACCTCCAGGGGAGTACCAGGAAAACGATGACTCTGGTCCAAGTCAAGAATACAGTTTTGACTTCTTCAACTACGCTGGTATTCATCGCTCAGTACTTCTCTACGCCACACCCTCGGTGTATCTCTCAGATATCACCATAGCAACGGACTACCTTTATGATGCGGGTATCATTAAATTCATCACTGCTGTTGGATCAACCGCTGGTCATAATGTCCGCCGTAGTGATGTTATCATGCTTTATGAGCTACTTGACCATGACAGGAAACTGGTAATGGCGGTAGATGGCACTGGGATGCTGGAGGGAGAGATACGGGTAGTAAATCCCTCACTCTGGTGGCCTAGAGGAATGGGCTATAAACCTGGATACCTTTACACACTTCAGATATCAACTATTACCAATACCACCCGTGATGTATATCGTCTTCCAGTAGGAATACGATCGGTGAGACTTCTCAGAACAAGATTCTTGATCAACGATGCACCCTTTTATTTCAAAGGATTTGGAAAACATGAAGATGCTGATTTTCGTGGTCGTGGATTTGATCTCGCGACAATGGTAAAAGATTTCAATCTCTTGGATTGGTTTGGTGCCAATTCTTTCCGCACAAGCCACTATCCATACTCAGAAGAAACAATGAATTTAGCAGATGAGCTTggctttgttgttattgatgaGTGTCCCGCCGTCGGCTTTTCAAAACTAGACTATTTCAACGATCGTACATTTGGCCTTCACTTGAAGATCATGGAGGAATTAATAAAAAGGGACAAAAATCATCCGTCTGTCGTGATGTGGTCAGTGGCTAACGAACCAATCTCTGAGTACGAACATGTAGCTGATCATTTAAGTAAAATAATACATTGGACGAAAGAAGAAGACTACCAAAGGAGACCTGTGACGTTTGTTACTAACAAGAATCCACACAACAGCGAAGGACAAGAAATGGCGgCAAAATACTGCGACGTCATATCGTTTAATCGCTACTACGGCTGGTACACGTTCCCaggaaaaatggaaaaaatcgGTCCAACATTGCAGTGGGAGATGACCGAATGGTACGAAAGGTACAGAAAACCCGTACTAATAACAGAGTATGGTGCAGAGGCTCTTGCAGGATTACACAAGAATCCGTCCGTGATGTATACAGAGGAATATCAGGCCGATATAATGAAGCACTACTTCCCAGTATTCGATAAACTGAGATATCATTTCCTGGTGGGAGAAATGATTTGGTCCTTTACAGACTTTGCGACTCCAGAATCTATAAAGCGTGTTGATGGGAACCACAAAGGTGTCCTGACAAGAGAGAGACAGCCCAAGGCCTCAGCGCACATCCTGCGGAGTCGTTACCAGTCAATAACTCTCCATCACTGTCACAGATGTACTGGTGATGAACTGTTTGATTATCTTTTGAGATACAGGCGCACAAAGCGCCATTCATATGATTTTGAGAAGCCAATACAAAGACTGCGTGGTTTGATACGAAGCGAAAGAGTCAATACCACTATTGACAGAAGATCTGTTATCCCAAGACTGTAG

Transcript

ENSDLIT00000019135

ATTCTTTACAGGTGCTACCTGggataacaataaaataaccTGACGACTTCTctcaaaaacaagaaatatgtTACCATGATTAAGTTCATACTTcatttaattctatttttgacCTTTTATCGTTCCCAGCTATGTATTGGTATATTTCATGGATCACTTGGTAATGGAATGTTGTATCCACGTGATTCTGAATCTCGTGAATCCAAATTCTTGGATGGTATGTGGAACTTTAAAGCCGACACTTCAGTCCGCCGATCGGAAGGATTTGAACAGATGTGGTATAATGGTCCTTTGCATCAGGCAGGTGAAGTCATTGCAATGCCAGTTCCTTCCAGTTATAACGATATCACAGAGCTAAGGTGGCTAAAAAATTTCGTTGGCTGGGTTTGGTATGATCGAACATTTTACGTCCCTTCATCGTGGGCCGTAAACTATCGCTTGTTGCGAATTGTATTGAGGTTTAACAGCGTCAACTATTATTGTAAAGTGTGGCTAAATGGTCGTGAAATCACAAGTCATGAGGGCGGTCATTTACCGTTTGAAGTGGAAGTAACAAACTATTTAGATTATGGTGGAGCTAACAGACTGACAGTTGCAGTTAATAACACTCTAACGCGCTTCACTGTACCTCCAGGGGAGTACCAGGAAAACGATGACTCTGGTCCAAGTCAAGAATACAGTTTTGACTTCTTCAACTACGCTGGTATTCATCGCTCAGTACTTCTCTACGCCACACCCTCGGTGTATCTCTCAGATATCACCATAGCAACGGACTACCTTTATGATGCGGGTATCATTAAATTCATCACTGCTGTTGGATCAACCGCTGGTCATAATGTCCGCCGTAGTGATGTTATCATGCTTTATGAGCTACTTGACCATGACAGGAAACTGGTAATGGCGGTAGATGGCACTGGGATGCTGGAGGGAGAGATACGGGTAGTAAATCCCTCACTCTGGTGGCCTAGAGGAATGGGCTATAAACCTGGATACCTTTACACACTTCAGATATCAACTATTACCAATACCACCCGTGATGTATATCGTCTTCCAGTAGGAATACGATCGGTGAGACTTCTCAGAACAAGATTCTTGATCAACGATGCACCCTTTTATTTCAAAGGATTTGGAAAACATGAAGATGCTGATTTTCGTGGTCGTGGATTTGATCTCGCGACAATGGTAAAAGATTTCAATCTCTTGGATTGGTTTGGTGCCAATTCTTTCCGCACAAGCCACTATCCATACTCAGAAGAAACAATGAATTTAGCAGATGAGCTTggctttgttgttattgatgaGTGTCCCGCCGTCGGCTTTTCAAAACTAGACTATTTCAACGATCGTACATTTGGCCTTCACTTGAAGATCATGGAGGAATTAATAAAAAGGGACAAAAATCATCCGTCTGTCGTGATGTGGTCAGTGGCTAACGAACCAATCTCTGAGTACGAACATGTAGCTGATCATTTAAGTAAAATAATACATTGGACGAAAGAAGAAGACTACCAAAGGAGACCTGTGACGTTTGTTACTAACAAGAATCCACACAACAGCGAAGGACAAGAAATGGCGgCAAAATACTGCGACGTCATATCGTTTAATCGCTACTACGGCTGGTACACGTTCCCaggaaaaatggaaaaaatcgGTCCAACATTGCAGTGGGAGATGACCGAATGGTACGAAAGGTACAGAAAACCCGTACTAATAACAGAGTATGGTGCAGAGGCTCTTGCAGGATTACACAAGAATCCGTCCGTGATGTATACAGAGGAATATCAGGCCGATATAATGAAGCACTACTTCCCAGTATTCGATAAACTGAGATATCATTTCCTGGTGGGAGAAATGATTTGGTCCTTTACAGACTTTGCGACTCCAGAATCTATAAAGCGTGTTGATGGGAACCACAAAGGTGTCCTGACAAGAGAGAGACAGCCCAAGGCCTCAGCGCACATCCTGCGGAGTCGTTACCAGTCAATAACTCTCCATCACTGTCACAGATGTACTGGTGATGAACTGTTTGATTATCTTTTGAGATACAGGCGCACAAAGCGCCATTCATATGATTTTGAGAAGCCAATACAAAGACTGCGTGGTTTGATACGAAGCGAAAGAGTCAATACCACTATTGACAGAAGATCTGTTATCCCAAGACTGTAGCCTTTTAGATTATGGCCTAGCTTTCTGCACATGCAGGGAACTTTTGCAgggaatttttcttttctggagTTAATGTGCAGTTGCGACGTTTGGAGACTGGGTAGGAAGGAAAAACTTAGACTATTCCTCGGACAGAGAAAGAGTACAGTGTAAATGACGTAACGATAACCCTAACACTGCACTCTCTCCGCCCATGGAGTAGTTTCTTCCGAAGTAAAAAGCCACAAGCAGGTTTTCTTCTTCGTGTTCTACCCCTTCCCCTTAGGTTAGCTCTTAATTAGACCACAAGAAACTCTAGAGGGATAGAGCGTTCAATTTTGGTGTACAGTGCCTATAAACGTGAAAACTAGAGTCCAAAAAGGTCATGGCTTAATCAATCTCAACcaacttaattttattttaaagtaagaaaaaatattcaatttatgaTTCGGATATGAAAGATTTGATATTTGAAACTGATTGTCGAATTGGAAAATTTTGAGATGTGAAAGAtatatagactccttgcagttcgttggaatgcatcTCAACTTGGAGAACAAAACTATGGAGagaaaaaatcttttgttttgtcctccagatggggctgctttgacgtcacatgcaaggcatttattgtgcaaaaactaaatgcGAGCAAAAGttaacactatttagtagtaaataaaacaaaagaaaacaatagaattagcataagatagcactttttagtggtattt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P12265	Beta-glucuronidase OS=Mus musculus OX=10090 GN=Gusb PE=1 SV=2
O77695	Beta-glucuronidase (Fragment) OS=Chlorocebus aethiops OX=9534 GN=GUSB PE=2 SV=1
P06760	Beta-glucuronidase OS=Rattus norvegicus OX=10116 GN=Gusb PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001408 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02837 all species →	Glyco_hydro_2_N	Glycosyl hydrolases family 2, sugar binding domain	Domain	Interproscan
PF02836 all species →	Glyco_hydro_2_C	Glycosyl hydrolases family 2, TIM barrel domain	Domain	Interproscan
PF00703 all species →	Glyco_hydro_2	Glycosyl hydrolases family 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006104 all species →	Domain	Glycosyl hydrolases family 2, sugar binding domain	Interproscan
IPR006101 all species →	Family	Glycoside hydrolase, family 2	Interproscan
IPR006103 all species →	Domain	Glycoside hydrolase family 2, catalytic domain	Interproscan
IPR023232 all species →	Active_site	Glycoside hydrolase, family 2, active site	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036156 all species →	Homologous_superfamily	Beta-Galactosidase/glucuronidase domain superfamily	Interproscan
IPR006102 all species →	Domain	Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10066 all species →	BETA-GLUCURONIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004566 all species →	Molecular Function	beta-glucuronidase activity	Interproscan
GO:0019391 all species →	Biological Process	obsolete glucuronoside catabolic process	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDLIP00000017458.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.