Gene detail

Detailed information of ENSDLIP00000018517.1 in Diadumene lineata

Genomic Location: not available for this species
NR annotation: KXJ09385.1, Pyridoxal 5'-phosphate synthase subunit SNZERR [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Sequence

CDS

Transcript

ENSDLIT00000020327

TGGCACGTGAAATTACATCATTTGAAAGTGTGCTTCTAGCGGATCAAGATGTCAATGGACGTTCCCCAAGACCTGAGAAACGGCTTTCATAATGAAGTCAGTAATCTATCTCTGAATGAAGCCAACAATGGAGGGACTTTGGCTCCTGTTCTCCATCATAAAACAGGTACATTTAAAGTCAAAGCTGGATTAGCACAGATGGCAAAAGGCGGCATCATCATGGATGTTACTACTGCAGAAGAAGCAAGAGTAGCAGAAAGTGCAGGAGCCTGTGCTGTCATGGCACTTGAAAAAATCCCATCAGACATTCGTAGAGATGGAGGTGTGGCACGTATGACAGACCCTAAGTTAATCAAGGAAATCATCAATGCCGTCACCATCCCTGTCATGGCTAAAGCTAGAATAGGACATTTTGCTGAAGCACAAATCCTTGAAGCTCTTGGAGTTGATATGGTGGATGAGTCAGAAGtatTGACTGCAGCAGATGATGCTAACCACATTGACAAGCACAAGTTTAAAGTCCCATTTGTTTGTGGTGCAAGAGATCTTGGAGAAGCACTGAGAAGAATCTCTGAGGGAGCTGCTATGATTAGAACTAAAGGACAGGCCGGAACAGGTGATGTATCTGAAGCTGTTCGACATGCAAGGGCAATCCGTTCCCAGATTCGTTATGCTCAGGGACTTGACACTGCTGAGCTATATAACTATGCTAAGGAATTACGAGTACCATTTGACTTGCTTCAGAAAACAGCAGAGCTTGGTCGTTTACCTGTTGTTAATTTTGCAGCTGGTGGCTTAGCCACACCTGCAGATGTGTCTTTACTAATGCAGCTTGGTGTAGATGGTGTATTTGTTGGCTCAGGTATCTTTAGAAGTTCTAATCCACCCAAGAGAGCAAATGCCATGGCACAGGCTGTCACTCACTATAAAAACCCTGCTAAACTAGCAGAACTGAGTGAAGATTTGGGAGATGCAATGTTTGGTCAACCAGCTTCAAAGGTTGTGGgctataaatgattttttttctttatgaagcatacaatacaacataatattatataatacttCAGTCCTTATATGATGGCTACacgttttaatttttatttgaaaatatataaaaacccacaatatttttttatgttttgaaagTCAACAAAAATGCTCTTTTGGGCTTATTGACCTGGAGGAGAGAAACTGTGTGGACATTTCCCAGTAACGCTAAAAATTATAGTcagtttattcatttcaattgTCAGTACTTTAAACAGAACACATGTAAAAAACAcagtttcattttttctaGAGTTTTTCTATGAGGTGCTTGCATGGTTATCAATCAATGATGTTTTATAGTGTGATGTCCGAATAGTCATTGATTGAATTAtgatgacaaaaatgcattataAAAGATGTAAACACAAGCTAGAAATTTATTCAATGCAACTTATATTTTcacataaaaatgaaaacctgTAAACGTCATAGGGTGGACTTAATTCACACATTGAATTGGGCATATACATTAATTAGATTTGATAACAGAAACAATGATTACTTTATAAGAGTCCATTTTGTATGGGTGGAAAACAGTTTAATTTTCTGTCGTAACTGTAATTTTTAAGAAAAGCATTCACATCTTCAGctttatcattataatatagtttaaatagaccagtttcaagttcttcattgctcaggctaagacTCAATtctaggtaaattaacaaaagagtcaagacaaaaccattggtatttatattgtttttggatggtgcattcccacgggatataccttgtacaaaagaatatatcacatactatcgaggcttagcctgagcaatgaagaacatcaAAATGGACTATATCATAGCTGTACTGTTTCATGGTTTTACACATGTGAATGTATGACTCTGTGGTCTCCGACACAAAAACCACTACATAACATTTTCCATTTATCATCTGCTTGTTCTTATTTTtatgcattattattatacactGCAACCTAAAACATCCAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8WPW2	Pyridoxal 5'-phosphate synthase subunit SNZERR OS=Suberites domuncula OX=55567 GN=SNZERR PE=2 SV=2
Q54J47	Probable pyridoxal 5'-phosphate synthase subunit pdx1 OS=Dictyostelium discoideum OX=44689 GN=pdx1 PE=1 SV=1
Q69LA6	Probable pyridoxal 5'-phosphate synthase subunit PDX1.1 OS=Oryza sativa subsp. japonica OX=39947 GN=PDX11 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006083 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01680 all species →	SOR_SNZ	SOR/SNZ family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001852 all species →	Family	Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ	Interproscan
IPR033755 all species →	Domain	PdxS/SNZ N-terminal domain	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR011060 all species →	Homologous_superfamily	Ribulose-phosphate binding barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31829 all species →	PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042819 all species →	Biological Process	vitamin B6 biosynthetic process	Interproscan
GO:0042823 all species →	Biological Process	pyridoxal phosphate biosynthetic process	Interproscan
GO:0006520 all species →	Biological Process	amino acid metabolic process	Interproscan
GO:0008615 all species →	Biological Process	pyridoxine biosynthetic process	Interproscan
GO:0016843 all species →	Molecular Function	amine-lyase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06215	pdxS, pdx1; pyridoxal 5'-phosphate synthase pdxS subunit	EC:4.3.3.6	Vitamin B6 metabolism	ko00750	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.