Gene detail

Detailed information of ENSDLIP00000018910.1 in Diadumene lineata

Genomic Location: chr2:21055869...21065232
NR annotation: XP_020912767.1, ATP-binding cassette sub-family E member 1 [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSDLIT00000020811

ggcagccattttgaatcttcCGGTAACCGGTTTCTGTTAAGAATTGACGTAAATCTAAACCATTTACAGCGTGTAAAATGTCGAAACGAAAACAGGCTGACGAAGCAACACAAGACAAACTCACACGTATTGCCATTGTTAGTTCAGATAAGTGTAAACCTAAAAGATGCGCTTTAGAATGTAAAAGATCGTGTCCAGTTGTCCGCATGGGAAAGTTATGTATTGAAGTGAAGCCTGATGATAAACTTGCTTTCATTTCTGAAGTTTTGTGCATTGGTTGTGGTATTTGTGCCAAGAAATGTCCATTTGAAgctatcactatcatcaacttGCCCAGTAATCTTGAGAAAGAAACAACCCATCGCTATGGTGCCAATTCTTTCAAGCTTCATAGACTTCCAATACCTCGTCCAGGTGAAGTACTAGGTTTGGTTGGGACAAATGGTATTGGAAAGTCCACAGCATTAAAGATCCTTGCTGGAAAACAGAAGCCTAACTTAGGACGATTTGAgAATCCACCAGACTGGCAAGAAATATTGTTGTATTTCCGTGGTTCTGAGCTTCAAAACTATTTTACTAAAATCCTTGAAGATGACCTGAAGGCTATCATTAAACCACAGTATGTTGACCAAATCCCCAAGGCTGTCAAGGGAAGCGTACAGTCCATTCTTGATAGAAAAGATGAAACAGAGAGCCAAATGGATATCTGTGAACAGTTAGATCTTACTGCTGTTTGTGATCGAAATGTTGATGAGCTTTCTGGTGGTGAATTGCAACGTTTTGCTTGTGCTGTTGTCTGCATACAACAAGCTGATGTATATATGTTTGATGAGCCGTCAAGTTACTTGGATGTTAAGCAGCGTCTGAATGCTGCCAGGACAATCCGTAATCTCCTATCCAATGACAGGTATGTCATTGTTGTAGAGCACGACTTGAGTGTGTTGGATTACCTGTCAGACTTCATCTGTTGTTTGTATGGAACTCCAGGTGCCTATGGAGTGGTGACTATGCCTTTCAGCGTCCGAGAAGGTATCAATATCTTCTTAGATGGATTTGTGCCAACTGAGAACTTACGTTTCAGAGAGACTTCACTGGTCTTTAAAGTATCTGAAACTGCAGACAAGGAGGAGGAAGTCAAGCGTATTCGTCGATATGCCTATCCAGCCATGTATAAACAACTGAagGACTTTCAACTTAACATTGTGGGTGGTGAATTTACAGATTCAGAAATCATTGTTATGCTTGGAGAAAATGGTACTGGCAAAACAACTTTCATTAGAATGCTTGCTGGTAAACTGAGCCCTGACAATGATGAGGAAGTACCAATGCTGAATGTGAGCTACAAACCTCAGAAGATCAGCCCCAAATCTCAAGGAACTGTCAGACAGTTACTGCATACAAAGATCCGAGATTCTTATGTGCATCCACAGTTTATTGCAGATGTCATTAAACCACTACAGATTGAAAATATCATGGATCAAGAGGTTCTCAATTTGTCTGGTGGTGAACTTCAACGTGTTGCTCTCACAATTTGTCTTGGAAAGCCAGCTGATGTGTATCTCATTGATGAGCCATCTGCATACCTCGACTCTGAACAGCGTTTGGTGGCAGCTAAAGTCATTAAAAGatTCATTTTACATGCTAAGAAGACTGGCTTTGTGGTAGAGCACGATTTCATCATGGCTACATATCTTGCTGACCGTGTGATTGTGTTTGAAGGAACACCATCTGTGAAAACTGTTGCTAACTCACCACAATCATTGCTGACTGGAATGAACAGATTCTTAGAATCGCTTCAGATAACATTCAGACGAGACCCCTCTAACTTTAGACCTCGTATTAACAAGCTCAACTCTGTTAAGgaCACTGAGCAAAAACGGAGTGGGAACTTTTTCTTCCTTGAAGACTGAGGCTTGCTAAGGGCAAAACCAAGGATCTTCTCAACAGCCACAGCAGCAGATGTGTGGTCGGGTCTCAGCTCGGCTTTCTGGCTGGTCAGACATGTTCATTTCCACTCTTCATTGTGGGGTTCACAAGAACGGTGGCTGTGTAGTGGATAATTGGTTTAAGCACCttataatatttgttttattgattttaatgtGCACAAAAATGGGATAAAATTGCTATGCATTTAAGGTGGTATTAATGTCCAAAAAATCTTGTAGCCTGTCACTTATCAGAAGTTAGATATGAAAGGAGTTTGGTGACTCATCCAAGTAAGAAGTCGGTAGATTGATTTAAGTGTTTTCTAAAATTGTAGTAtgtttaagtaacaatacgcataagaactagtgaggtttctattgttctacGGCAATTGCAACTTCCCCACatagaaattatttaattttcacgatggtgatgtatcaagctaagggttacacatttcttaagtacaatctacaaaatgctgtttacaagacggtgtttcttttgtgtttcatggttttgtccaatcataattgctcaaaacaatggctaggagatgcttgcttttcatagtgagccccacggtaaaattttctcatagaaaaaaataagatcactttaataaaactggaatgagattttgaataaaatatagaaaaaaaatccaaaaagtttgaaacaaggccaattttcttgttttagccaatcagatcaagcatttaaacaataaacacctttatgcattccattgtcgtttgctacactagttcttactctgAGCGTTACTTAAactaaacaatgataaatcaTTAGTTCACATCAATCATTAGAACACACTGATATGTTACATTGGTAAAATAATTATGTTGtgatttaaataattatatttgcctttattgatttcttttcaaaaacaaaatatttttttccaattacATTTTTGATCCATTACGCAGccatctttctttctttggtCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P61221	ATP-binding cassette sub-family E member 1 OS=Homo sapiens OX=9606 GN=ABCE1 PE=1 SV=1
P61222	ATP-binding cassette sub-family E member 1 OS=Mus musculus OX=10090 GN=Abce1 PE=1 SV=1
Q9VSS1	Protein Pixie OS=Drosophila melanogaster OX=7227 GN=pix PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006234 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04068 all species →	RLI	Possible Fer4-like domain in RNase L inhibitor, RLI	Family	Interproscan
PF00037 all species →	Fer4	4Fe-4S binding domain	Domain	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017896 all species →	Domain	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR007209 all species →	Domain	RNase L inhibitor RLI-like, possible metal-binding domain	Interproscan
IPR017900 all species →	Conserved_site	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Interproscan
IPR013283 all species →	Family	RLI1	Interproscan
IPR034348 all species →	Domain	RLI, domain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19248 all species →	ATP-BINDING TRANSPORT PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000054 all species →	Biological Process	ribosomal subunit export from nucleus	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0006415 all species →	Biological Process	translational termination	Interproscan
GO:0043024 all species →	Molecular Function	ribosomal small subunit binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06174	ABCE1, Rli1; ATP-binding cassette, sub-family E, member 1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Diadumene lineata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Diadumene lineata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →