Gene detail

Detailed information of ENSDLIP00000019149.1 in Diadumene lineata

Genomic Location: chr4:11506412...11527850
NR annotation: XP_020912041.1, LOW QUALITY PROTEIN: protein fantom-like [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSDLIT00000021096

ATGCCAGCGTCATTCAAAATGGATTTTGGTTCTCCTGATCAATTTGAGGATGGAGaAGGGAAACCATTCAGTGAAGTCCATGCTAAACAGATGATCTCTAAAATCAGTAGAGAAGAACTGGAAGATAAATTCTTGAGACTGCAAGAAGATAACACTGAACTCAAGAAGTATGCAAGAAAACAAGAAGAGAAAATTAAGAAGATGGCCACAAAGCTACTTCGTCTTGTGGcagataaaaagaaaagagaaaacatgttTGGAGGTCCTGGTGGAAAGGATGTAGAATTGGAGGAGAAAATGGCTGACTTGCATGAAAAAATAGTGGaactagaaaaacaaaacagtaatTTAAAAAGCAAATTATCTATAGCCAAACAACAGTTGCAAACTCAAGGTAAACGCACCACTCCTTACGACCACATCAAGCCAAGAATAAATACTGGAATCCATGCCCGGTCACCTTCTGGTAACAGATTAAAGAAGAATCTAAGAGTACAAGGACATGACATTAGGCCAGGATCAAGACTTCCTCCTGCTCCAACCCCAGTGCTAGCACAGCCAAGATATGGACATAGTTTACTTGAAGAGGCAAGACTGGAAAAAAGAGAACTGGAAGATTTTATTGCACAGCTTCAAGATGAAATTCAGCTTCTTGAAGAAGATAAAAGACAGCTACAACAAATGATGGAAGAGAGGGACCTAGAACACGAAGAAGAACTAAGACTAGCAAGAGACCAGTTGACAGGAGTACAAAGAGCAAATCTGCAAGAAAATGTTGACATGATCAAATTACAACGAGAAGTGAAAGACAAGTCTACAAAACTGCAAGCACTGCAAACCAAGTATACAAGTCTTGATGAGAATCTTACCAAAGTGAAGCAAAGCCACTCTCAGTTGCTAGAAGAAATGGACAAACTAAACACCAAACTGAAGGAGGAGCAGACTAAGAATCTTATGCTTTCAAACGACATCAAGTCAACAGGAGTTGCATCAAAATCCATGGTAGAGcAAATCCAGCTGATTTCTGATCTCAAAGCTGAAAATGAAATCTTAAAAGAAGCTAATGAAAAACTAGTAAATAGtgcATTTGATGTTGACAGAGAAAGACAAcatagaaacaaacaaagacagctagagGTTGAACTGGAACAACACAAAGCTACAATCAACTCTGATTTGAtggaaaagaatgaaatacTTGATAAACTTACAGCAGAAAGGGAAAGCGCAGAAAAGGTGCAAGAGGAACTTCGTGAGTTGAGGATACAACATTACACACTCAAAGAACAGTATGATACTCTGAAAGAGAAAATGAAGTTCTTTACAAGGGAAAGTGCTGTAGACTTCCAAGAGATTGAAGAAGCTTTGGTTTTAATCAAGcAAAGAAAAGAGAAAGGTAGTCAAGATCTTGATTTCCTGGAAAAAGTAGATGATGAATTAGAAAAAGatttaaaaaagcACCATACAGAGCTCCAGGCATCCCATGCAGACACTATCAATGAACTAGAAAAGACTCGAAATATGCTGATAATACAACACAAGAttaataaagactacaaaacagagGTGGATCGGGTTACAAAAAAGATGCTAGAAGACAAGAAAGAATATGATCTGAAGATGCAGGAGTATGCACAATTACTAGATATACGAGCAGACAGAATAAGAAAACTTGAAGCTCAAATGCGAGACATTGCATACGGaaccaaaaaatacaaaacccTTGCATCTGAGgaTTCAGAGTATGATGAAATGGATAGTACTCTAGAACTAGAGAGAGGACAAAATGTCTTTGAGATACATATAGACAGGGTGGCACTAAGTGAAGCATCATCTGGTGAGTTTGGTAGTGCTGAACCAGTGACCTTTATTACTTATGAATTCTTTGAGCATGAACTACAAGCTACTCCAGTCATGCGTGGATCAAGTCCACAGTTTAACTTCACATCTCAGTATTTGGTACAAGTTGATGACTTCTTTCTTCACTTCCTTCAAAAGGAGTCAACTCTAGTGGAGCTTCACCGTGCATTTGGTACAGACTACAAGACCATAGGGGCCTGTCAATTGAAGTTTAGAGAATTATTAGAGAAATCACATGGTAGACTTCATGGGACTGTAAGATTATTAGGTACCAGTCCACCATGTGAAGGTCAAGAGATAGGTGTCATGGAGTACTGGGTTCGACTTAGAGTACCAATGGATCAAGCTATCCGTCTATTCAGGGAACGCACTAAGGCTCTTGGGTACATGAATGCAAGTGCTTGCACTGCCCTAGAGGATGCTGGGCACCCACAGAAAGCTCCATCCGATGTCAATGAGCTTGATATTCATGTAATCAAGTGCTCAACTTTAAAACCAAGAAGAGAAGGTATTCAGCCAAGTCCATACTGTGTTTACAAGTTCTATGATTTTGCAGATCATGACACCCACATTGTTCATAATTCTAATGAGCCAGTGTTTAATGATGCCAAGACCTTCCCAGTTCCTATGAGTCAAGAGTTAGATACCTACCTTAGGACAGGGATGCTGGAGATATATGTCTTTGATGATGCTGACAGTGAGATTGGGCAGTATCTTGGTGTTGCCAAGGTCTCTTTGATATCTCTAGCTAATGATAAACCTGTCAAAGGGACTTTTGAATTAAGAAAGCCATCAGGTGAAGTAAATGGTTCTATTGATGTATGGTTAAAGTGGCGATATACCTATCTACCTGCTAGTGCAAAACCTCAAACATCTAAACAgcGACTGATGGCTGTTCCCAAAGATGAACAAGAACTAGAACAGTCTGGTGACCCTGTAGAGTTGTTACCAAGGACACCATCCCAGCCTAGTGCTTCATCTATAGATCATTTACAAGAACCAGTTAGCTCTTCGACGCCTAAACAGGTTGAGTCAGATATTATCATCAAAGTACCTGAACCAAAGGAGAGTAAACCACTGCctgtaaaaagaaagaaagagatgGTAGGAGAGAAGATCAAGGAGAAACCACCAAAACTCAAACCAGCCAAGCCCTTTAAAGAGATGTCTGTTGACGAACTAGAACAGGAAGCCTCTTCAACCAAACCTAAACCAGTTCCCCGTCGACGAGCGTCGTCTCTTACTGCAGGAGCTAAACAAGATGAGAAACCTATTGAAGAGATGAATATAGATGAAATGGTTGCTGCAGCGGCTGAGCAAGCAGTGACAGACAAGAAGGAGGAGAAACATGAGTTTGATGACGAGACTGAAGATGAATCTGAAGTAGAAGAAGAAATTGAGGAAGACGTGGATGATGACGAGAGCGATGAAACAGCCCAGGTAGCCGAGGAAATGCGACGCACCGCTGAACGAGATAATGGCGATACAGTGTTTGGTGATACTACATTTGAAGAAGAACAACAATCCGATGATAAAGATTCCACATTAGGTGAAGATGTTGATCTACCTGTACCTGGTGGTCAAGCTGACAGTCAGAAGGGTTATCAATCAGAGACCAGTGGTAGTGAAGCTGGACTAGTGGTGACCCCTTCACCATCTAGAGGAGCATCGGCTATAGCAGCACATTCACAGGCTATTACGATCCAGATCACGAGTCTGACGCTAGAAGAAGGTTCTCCTATATTACTCAACAAAGCCATTCAACAACTGTTTATTAGCTATCGATTTCTTGATTGTGATCCAGCTGATTTAGAGACCCCTATGTCTTTACAAAAGCCTAAGGCGGCTGATAGACCTATTTACTATAACTTTAAGAAAGTTTTCCATGTTGATGCTGAGACGAATCCTACCAAGAGGAACTACTTAAAATACATGTTAACTGAAGAAAGCCCCACGGAAGGCAGGATAATCTTTACTGTTGTGAGCGAGCCCACTGACCCTGATGAAGATGATTGTATGGATGTAGCCTATGCATATGTTGATCTGTTAGAGaTTCTACAAACTGGCAAAGACATGATTGACAAAGACATTGATCTAATGAGTCTTACCGATGAAGATCAGACTGCCATTGGTTGTCTTACTGTGACAGTGGAGGCGTTTGAAGCATTGATAAGTCTTTACGATGATCAGGACGACTAG

Transcript

ENSDLIT00000021096

CTTGAACTTCAAAAATGGCGGCTACTTTATGACAGTAAAAACATGTGAAAACAAGTGATTTCTGCCGTCCTCTTTCTAACATTTTGGAAACAATTACTTCAAAGATTACCCAAAAGATGTATTGTACTTCATTAATGGTTTGAAAGCTGTGGTTTGGAtctttttgtctttctttttacTGTTTCTTTTGTCGCCGTGGAGAGTGGTCGGGTTTTGTTGTCGTTGGCCACTGTTGCTACAAATGAAAATGGTGCAGCTGTTGTTGTATGGACAAATATTTATAAACCTTTAAGGTTGTAATGCCAGCGTCATTCAAAATGGATTTTGGTTCTCCTGATCAATTTGAGGATGGAGaAGGGAAACCATTCAGTGAAGTCCATGCTAAACAGATGATCTCTAAAATCAGTAGAGAAGAACTGGAAGATAAATTCTTGAGACTGCAAGAAGATAACACTGAACTCAAGAAGTATGCAAGAAAACAAGAAGAGAAAATTAAGAAGATGGCCACAAAGCTACTTCGTCTTGTGGcagataaaaagaaaagagaaaacatgttTGGAGGTCCTGGTGGAAAGGATGTAGAATTGGAGGAGAAAATGGCTGACTTGCATGAAAAAATAGTGGaactagaaaaacaaaacagtaatTTAAAAAGCAAATTATCTATAGCCAAACAACAGTTGCAAACTCAAGGTAAACGCACCACTCCTTACGACCACATCAAGCCAAGAATAAATACTGGAATCCATGCCCGGTCACCTTCTGGTAACAGATTAAAGAAGAATCTAAGAGTACAAGGACATGACATTAGGCCAGGATCAAGACTTCCTCCTGCTCCAACCCCAGTGCTAGCACAGCCAAGATATGGACATAGTTTACTTGAAGAGGCAAGACTGGAAAAAAGAGAACTGGAAGATTTTATTGCACAGCTTCAAGATGAAATTCAGCTTCTTGAAGAAGATAAAAGACAGCTACAACAAATGATGGAAGAGAGGGACCTAGAACACGAAGAAGAACTAAGACTAGCAAGAGACCAGTTGACAGGAGTACAAAGAGCAAATCTGCAAGAAAATGTTGACATGATCAAATTACAACGAGAAGTGAAAGACAAGTCTACAAAACTGCAAGCACTGCAAACCAAGTATACAAGTCTTGATGAGAATCTTACCAAAGTGAAGCAAAGCCACTCTCAGTTGCTAGAAGAAATGGACAAACTAAACACCAAACTGAAGGAGGAGCAGACTAAGAATCTTATGCTTTCAAACGACATCAAGTCAACAGGAGTTGCATCAAAATCCATGGTAGAGcAAATCCAGCTGATTTCTGATCTCAAAGCTGAAAATGAAATCTTAAAAGAAGCTAATGAAAAACTAGTAAATAGtgcATTTGATGTTGACAGAGAAAGACAAcatagaaacaaacaaagacagctagagGTTGAACTGGAACAACACAAAGCTACAATCAACTCTGATTTGAtggaaaagaatgaaatacTTGATAAACTTACAGCAGAAAGGGAAAGCGCAGAAAAGGTGCAAGAGGAACTTCGTGAGTTGAGGATACAACATTACACACTCAAAGAACAGTATGATACTCTGAAAGAGAAAATGAAGTTCTTTACAAGGGAAAGTGCTGTAGACTTCCAAGAGATTGAAGAAGCTTTGGTTTTAATCAAGcAAAGAAAAGAGAAAGGTAGTCAAGATCTTGATTTCCTGGAAAAAGTAGATGATGAATTAGAAAAAGatttaaaaaagcACCATACAGAGCTCCAGGCATCCCATGCAGACACTATCAATGAACTAGAAAAGACTCGAAATATGCTGATAATACAACACAAGAttaataaagactacaaaacagagGTGGATCGGGTTACAAAAAAGATGCTAGAAGACAAGAAAGAATATGATCTGAAGATGCAGGAGTATGCACAATTACTAGATATACGAGCAGACAGAATAAGAAAACTTGAAGCTCAAATGCGAGACATTGCATACGGaaccaaaaaatacaaaacccTTGCATCTGAGgaTTCAGAGTATGATGAAATGGATAGTACTCTAGAACTAGAGAGAGGACAAAATGTCTTTGAGATACATATAGACAGGGTGGCACTAAGTGAAGCATCATCTGGTGAGTTTGGTAGTGCTGAACCAGTGACCTTTATTACTTATGAATTCTTTGAGCATGAACTACAAGCTACTCCAGTCATGCGTGGATCAAGTCCACAGTTTAACTTCACATCTCAGTATTTGGTACAAGTTGATGACTTCTTTCTTCACTTCCTTCAAAAGGAGTCAACTCTAGTGGAGCTTCACCGTGCATTTGGTACAGACTACAAGACCATAGGGGCCTGTCAATTGAAGTTTAGAGAATTATTAGAGAAATCACATGGTAGACTTCATGGGACTGTAAGATTATTAGGTACCAGTCCACCATGTGAAGGTCAAGAGATAGGTGTCATGGAGTACTGGGTTCGACTTAGAGTACCAATGGATCAAGCTATCCGTCTATTCAGGGAACGCACTAAGGCTCTTGGGTACATGAATGCAAGTGCTTGCACTGCCCTAGAGGATGCTGGGCACCCACAGAAAGCTCCATCCGATGTCAATGAGCTTGATATTCATGTAATCAAGTGCTCAACTTTAAAACCAAGAAGAGAAGGTATTCAGCCAAGTCCATACTGTGTTTACAAGTTCTATGATTTTGCAGATCATGACACCCACATTGTTCATAATTCTAATGAGCCAGTGTTTAATGATGCCAAGACCTTCCCAGTTCCTATGAGTCAAGAGTTAGATACCTACCTTAGGACAGGGATGCTGGAGATATATGTCTTTGATGATGCTGACAGTGAGATTGGGCAGTATCTTGGTGTTGCCAAGGTCTCTTTGATATCTCTAGCTAATGATAAACCTGTCAAAGGGACTTTTGAATTAAGAAAGCCATCAGGTGAAGTAAATGGTTCTATTGATGTATGGTTAAAGTGGCGATATACCTATCTACCTGCTAGTGCAAAACCTCAAACATCTAAACAgcGACTGATGGCTGTTCCCAAAGATGAACAAGAACTAGAACAGTCTGGTGACCCTGTAGAGTTGTTACCAAGGACACCATCCCAGCCTAGTGCTTCATCTATAGATCATTTACAAGAACCAGTTAGCTCTTCGACGCCTAAACAGGTTGAGTCAGATATTATCATCAAAGTACCTGAACCAAAGGAGAGTAAACCACTGCctgtaaaaagaaagaaagagatgGTAGGAGAGAAGATCAAGGAGAAACCACCAAAACTCAAACCAGCCAAGCCCTTTAAAGAGATGTCTGTTGACGAACTAGAACAGGAAGCCTCTTCAACCAAACCTAAACCAGTTCCCCGTCGACGAGCGTCGTCTCTTACTGCAGGAGCTAAACAAGATGAGAAACCTATTGAAGAGATGAATATAGATGAAATGGTTGCTGCAGCGGCTGAGCAAGCAGTGACAGACAAGAAGGAGGAGAAACATGAGTTTGATGACGAGACTGAAGATGAATCTGAAGTAGAAGAAGAAATTGAGGAAGACGTGGATGATGACGAGAGCGATGAAACAGCCCAGGTAGCCGAGGAAATGCGACGCACCGCTGAACGAGATAATGGCGATACAGTGTTTGGTGATACTACATTTGAAGAAGAACAACAATCCGATGATAAAGATTCCACATTAGGTGAAGATGTTGATCTACCTGTACCTGGTGGTCAAGCTGACAGTCAGAAGGGTTATCAATCAGAGACCAGTGGTAGTGAAGCTGGACTAGTGGTGACCCCTTCACCATCTAGAGGAGCATCGGCTATAGCAGCACATTCACAGGCTATTACGATCCAGATCACGAGTCTGACGCTAGAAGAAGGTTCTCCTATATTACTCAACAAAGCCATTCAACAACTGTTTATTAGCTATCGATTTCTTGATTGTGATCCAGCTGATTTAGAGACCCCTATGTCTTTACAAAAGCCTAAGGCGGCTGATAGACCTATTTACTATAACTTTAAGAAAGTTTTCCATGTTGATGCTGAGACGAATCCTACCAAGAGGAACTACTTAAAATACATGTTAACTGAAGAAAGCCCCACGGAAGGCAGGATAATCTTTACTGTTGTGAGCGAGCCCACTGACCCTGATGAAGATGATTGTATGGATGTAGCCTATGCATATGTTGATCTGTTAGAGaTTCTACAAACTGGCAAAGACATGATTGACAAAGACATTGATCTAATGAGTCTTACCGATGAAGATCAGACTGCCATTGGTTGTCTTACTGTGACAGTGGAGGCGTTTGAAGCATTGATAAGTCTTTACGATGATCAGGACGACTAGTACATTCACACATACTTGTTGTatatagatattttatttatcagaTAATTTAAGAAAGGTCTTGCACTTATacgtttttataaaaaaacaacagataAATGTTGCTAACCCGTTTTGAAACACCTCCAATCCTTCCTTACTAATCTTGGTTTGTAGAAAAGgtagaaaagaaaacaattaaacagCCAAcgaaaagaatgaatgaaagaagaaagaaaggagaGATAAGAGAGAAAGAACAGACgggaaaaagagaaagaaagaaaaataagaaagaaagGGAGGGTTTAAAGTATGGGAAACGTAGTACAAATTAAGGTAGAAAGAACAATGAAGAAGAACCTTAGGAAATGACGAAAAAACGCGATTTGAAAATTAAGTTAATTATTCACGTCAAGCTTGTCTTTGTACTTGGAaaattttcatatatttgtaCATACTGTGCATgctttcaagaaaaaaaatataataaaactatttgtCAATTATTGTTGTAGTCTGGCTTGCCGGAGTATGATAAAACTATTtgtcaattatttttatagtcTGGCTTGCCGGAGtataataaaactatttgtcaattatttttatagtcTGGCTTGCCGGAGtataataaaactatttgtcaattatttttatagtcTGGCTTGCCGGAGtataataaaactatttgtcaattatttttatagtcTGGCTTGCCGGAGtataataaaactatttgtcaattatttttatagtcTGGCTTGCCGGAgtatgtacaaaaaattaaagtacaatAATTCCATCctctaaaaatatataaacttaTAAACATCATTTTAATTTACCTAACTTTACTTACTAGGTCTGCTTACATTTAACTTCATTCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68CZ1	Protein fantom OS=Homo sapiens OX=9606 GN=RPGRIP1L PE=1 SV=2
Q8CG73	Protein fantom OS=Mus musculus OX=10090 GN=Rpgrip1l PE=1 SV=2
Q96KN7	X-linked retinitis pigmentosa GTPase regulator-interacting protein 1 OS=Homo sapiens OX=9606 GN=RPGRIP1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003431 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18111 all species →	RPGR1_C	Retinitis pigmentosa G-protein regulator interacting C-terminal	Domain	Interproscan
PF11618 all species →	C2-C2_1	First C2 domain of RPGR-interacting protein 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR041091 all species →	Domain	RPGRIP1, C-terminal	Interproscan
IPR031139 all species →	Family	RPGRIP1 family	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR021656 all species →	Domain	RPGR-interacting protein 1, first C2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14240 all species →	RETINITIS PIGMENTOSA GTPASE REGULATOR-INTERACTING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035869 all species →	Cellular Component	ciliary transition zone	Interproscan
GO:1905515 all species →	Biological Process	non-motile cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16550	RPGRIP1L; protein fantom	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.