Gene detail

Detailed information of ENSDLIP00000020487.1 in Diadumene lineata

Genomic Location: not available for this species
NR annotation: XP_020904688.1, synaptic vesicle membrane protein VAT-1 homolog [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Sequence

CDS

Transcript

ENSDLIT00000022652

TCCGCGCGCGGTTTTGCGGGAAAAATTCTTCCCAAGTTTCAAATTTCTTCCAGCGCTACGAATTGTGGGACGTCATTTCAAGCAACATGGCGGAACCAGAAGTCGAAGTGAAAGATGCTCCCGTTGAAAATGAGCCTGAAGTTGCTAAAACAGAAGAAACTAAGCCTGAAGAGGCACCAGCAGAGGTTCCGCAAGAAGAACCAACTATTCGAGCAATTGTTTTGACAGGTTATGGCGGCTACAGCAAATTAAAAGTCGAAAAGCGCACGAAGCCAAAAGTTACTGAAGGGCATGTTATTGTCAAAGTACACGCGTGtGGTCAAAGCTTTGGCGACCTAATGATGAGACAAGGAATGGTACCTTACTTCCACAAACCACCAGTCGTAATGGGTTTTGAGTGTTCTGGAGTGGTGGAAGAAGTTGCTGAAAATGTCAGTGGTCTACAGGTTGGTGACAGAGTGAGTTGTTTTCTTCATAGTGGTGCGTTTGCTGAATATGTCAGTGCGCCAGCGAACATGTGCTTCAAAATACCTGAATCGATGAGCTTTGAGGATGCAGCAGCCTTCCTTATTCCATAtcttactgcttatttcttgcTGTTTTACTGTGGTAATGTCACTAGGAGAAAGACTGTTCTTATTCATAATGCATCAGGCAGTGTGGGAATGGCACTTACCCAACTGTGCAAGACTGTAAAGGGTTTAACCATCTTTGGTACTGCTTCCTTGGCAAAGCATGATGCTATCAAGGACCTTGGTGTTGATCATGCTATTGACTATAGAACTCAAGATTatgttgaagaaatcaaaaaaaTTACTCCTACTGTTGATCTAGTTCTTGATCCTCTTGGTGGCCATGATACCAAGAAATGCTATGATCTCCTTAGTCCATTAGGTGCATTAGTAGTATATGGATGGTCAAATAATATTTCAGAATCAAAAAGCTTGTTTGCAGGACTCAAATCTtggtTTGGAGGAGTGACATTTAATCCATTGAAGATGATTAATGACAGTAGAACTGTTTCTGGCATGGATCTTGTTTTTGTCAATCCTGAATTGCTACATGAAGCCATGGATGAGTTGCTCCAATTGTACCTAGAGGGTACTCTTAAAATGCCTATTGATTCTACCTATGCCTTTGAGGAGATTGCACAAGCACACCAAAGAATGCATGACCGGGCCAACATTGGTAAGATTTTACTGTCTCCCTTCAAAGAACCTGACCCAGCTGCTGAACCTgtcaagaaaagaaagaaatcttTCAGCAAGTTCCATACAGAGAAACCCAAGAATGGTAAAGAGGACAAGGCTAAAGAAGAGGCACAAGACAGTGATGAGAAACCTGCTGAAACTGACAAGGAAGGTGAAGAAGCTGGTGCAGAGGTGACAAAGGAAGACGAGAAGAAAGACCAGGAAAAGGAAGAAGATGAGAAGAAAGaagatacaaaagaaaagaaggagGAAGAGacgaaagaagaaaagaaagatgaggaaaagaaagaagaagaaaagaaagaggaAAAGGCAGAAGATAAGAAAGAAGAGGAAAAGAAGAGTGAAGAAAAGGAAGAAGTTGCTGTTACAAATGTGACAGTAAAGGAAGAAGAGGTAAAACaagaggaagaaaagaaagtaGAGGAAACTAAAGAGGAAGCAAGGAAAGAAGAGGTTGTAACAGAAGAACTAAAGGACGAGCCAAAGCCAGAAGTTACAGCTGAACCCGAGGTAGAAGTGAAAGATGAAAGCAAGGAAGAGACAAAGGAGGAAAGTAAGGAAGACACAAAACAAGAAGCAAATTCAGAAGAACAACAAGAGGAAAAGGAAACCAAAGAAGAACCAAAGGACAATGCAGATGGAGAACCAAAAGAAGAAGCCAAAGAAGGagagaagaaagaagaaagtgaAGAAACCAAGAAaggtgatgatagtgaagaGAACACAGAAATGTAATAGCCTTGAGAATAAGGTGAAACACTCTAAAAGATCATTCTTGTTTAGACAATGTGATGAAAAGAGCACTATAAGATTTATAGTCCTGCCTATCAGACTGACAAGATATTTTGGAACTTGTTATTATATACTCTAGAGATTTTTTTTAGCTGagttgatatttaaaaaaggttGTCAGAGGCTGTGCATTATTCCAGTGAATAAAAACTATATTGTCATAGATTTAGAGATATAGTTACTTTATAGGTGTCTCTATCTTAACACTGTCAAAGATGATAGAGATTATACATTTGAGTATGTGTGATAGATCAATTAGTTATTGTAATCATGGTGATTATTGTGATTGCCATTTGACAACCTTTTTGCAAAGGATGTAATGATTTAGATAATTCAATTGTCATTAATATGATGATAATCAAATATTGTTGATCAAGAATAAACTGTGAAAACTTTGATAGAGTAGATCTTAACAAGtagaaaaaacataaattgtATGTTCTGTCGAATTGGACAAAACTAGATTAGTAAAAAGTGATTCTCAAACTTAGATGGAGATATAGGTTTAAACAATATTGTGATGGAAGCCAATCATCTGGGTGTAAGTGTCTTTGAAGCATAAAGAAACAACAATTCACCATCTCTCCTTATGAAAGAACCCAAGACATTATGGATCAAGGGCTGATTTGGGGCAgaaattttgcttttcatttcacttgAATCAATACAGACCTCTTACGTAAAATTCCATTttgatgtatttattttttagtcaGTATATTGGTGTAGGTGTCATCAGCTAATTTGTGTTCTTAGTACTTGACCCAGATGGTCAGTTTCTGTCCACCTATTAAATTAGGAATTTGTTTTACGTTTCTCTGGCTTTTCCAATTTGAGGGTTTTATCAAAAGCTTATTCATTTGAGATGTCAATTAATGTTTATGTTGATGGAAACAAAATAACCATTCATTGGTAAACACAATCAGAAGTTTTAGAGTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8JFV8	Synaptic vesicle membrane protein VAT-1 homolog OS=Danio rerio OX=7955 GN=vat1 PE=2 SV=1
Q3MIE4	Synaptic vesicle membrane protein VAT-1 homolog OS=Rattus norvegicus OX=10116 GN=Vat1 PE=1 SV=1
Q99536	Synaptic vesicle membrane protein VAT-1 homolog OS=Homo sapiens OX=9606 GN=VAT1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009493 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13602 all species →	ADH_zinc_N_2	Zinc-binding dehydrogenase	Domain	Interproscan
PF08240 all species →	ADH_N	Alcohol dehydrogenase GroES-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013154 all species →	Domain	Alcohol dehydrogenase-like, N-terminal	Interproscan
IPR011032 all species →	Homologous_superfamily	GroES-like superfamily	Interproscan
IPR020843 all species →	Domain	Polyketide synthase, enoylreductase domain	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR052100 all species →	Family	Synaptic vesicle ATPase and mitochondrial regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44054 all species →	SYNAPTIC VESICLE MEMBRANE PROTEIN VAT-1 HOMOLOG-LIKE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23167	VAT1; synaptic vesicle membrane protein VAT-1	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.