Gene detail

Detailed information of ENSDLIP00000020567.1 in Diadumene lineata

Genomic Location: not available for this species
NR annotation: XP_028512464.1, tRNA wybutosine-synthesizing protein 4 [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Sequence

CDS

ENSDLIT00000022736

ATGTTTGTGTCCTCTAGTAAAAGGGTCCAAATGACCAATGACAACTCGATTCTCAGCAAATATTCCATGGTCAAAGCTGGATATTTTGAAGATAATTTCATTCAATATTTTGCTGGTAAAGATGCAAGACGTTCTCCAAATATTAACAGGGGCTACTACCTTAGAATGAAGTGTGTGGATCACATGTTAAGGACATTTCTTACATCAGGTTTTCATAAAAAACAAATACTGTCATTAGGTGCTGGGTTTGATACATCATTCTTCAGATTCAATGAAGAAGGTCTCCTAAACGATTGCAGATATTTCGAGATGGATTTTCCAGGTGTTGTAAAAGCTAAGAAAGAAATCATCCATGGAGAACCTGCATTATCTTGTGCAGTTGGCAAGGAAACCAGTGGCATTCTACCTGTTGAAAATCTTTATTCTGACAAGTATGTTCTAATTGGTTGCGATCTAAAATGCAGACCTTCCGTTGAAGAACTCTTACTGAAGTGTAGGATTGACCTCCAATGTCCCACTTTCATTCTTTCTGAAGTTGCAATTTGCTATATGGATGCAACTAGTTCAGGTCTTTTAATTGAACGACTAGGAGAGATATTTGATGCTGCTGTGTTTGTTGCTTATGAGCAGGTCTACCCAAATGACCCCTTTGGTTTAATAATgatgcatcattttgattttaaaatgaaatctcCACTACAGACAATAAGCTCTTTTCCAACACCAGTATCACAGATGGAACGTTATATGACAAAGGGTTTTACCCATGTTCAATATGAAGACATGCTGTCCTTCCAGTTATCAATCAGCAAGGATGAGAGAGAATACTTACAAGGCTTGGAAGTGTTTGATGAATTTGAGGAAATGGACTTGAAGTGCCTCCACTACATGGTGATCTGTGCCTTCAAAGCAGCGTGTTTGGAGTTAGCACCGAAGATGCTTACAAACAGTACAACAAATgATAATTTAGAAGAGGATTTGGCGAAAAGTACAAAGATCTTTGTGGATCCAGATGTGTTGATGTCCTCTGTACCACATGATTGTATTTTGAGGTTTGGCCATACAGCCAACATTTTGCTGAGTGGCGACATTATAGCTATTGGTGGCTTTGGTAAATATCATGGCAAACATCACAAGAGACTGTCAAGAATTGCtgttataaatataaacattggTTGTCGTTGTTGTCAAGATTTGTGTGAGTCTAATGATGAAGAGAGAGAAGGTGATTCATGGCGATGTAAGACATATGATGGTTATATTGATTTAGgTTCAAGAATGTACCACACCACTACACTTCTTAAAGACTCTACATTGTTAGTGTTTGGAGGCCGGGCATCACCATTCAGAGCATTTAATGATATTGTTTTAATCGGACATGACACAAAGAATGAGCAATTTAATTGCTATAAGTTAGAGACCAATGGGATTGCACCATCTGGCAGGTGGAGGCACAGTGCTACCATATTTGAAGATGGAGACGGAGAAAAGCTGTTAGTATTTGGTGGCAGAACTACTAAAGAAATGGCTTTAAATGACTGTTATATTCTAGACATTGCACAGAAAATATGGAAAAAGGTTGATTTACAGGGAGACAACGTCATAGCAAGACATTCTCATAAGACCTGTTTATGGAAAGATGACCGTATTGTTGTTAGTGGGGGTCTCATGGGAAATGGCAAAGCTTTATCCTTAGTACAAGTTATTGATGTCAAGacaAAATCAATGTCCACACTAAATATTCAACCTCCTTTATTAACAAGATATTCCCATACAGCTCATATGGTCAATGACCACCTAATTATGGTTGGAGGTGTTCACCAAATATACACAGGGTCTAATACAATAGCTGTCGTTGATCTGGTATCACTCACATCAAAGCTGTTTTATTTACCAgtTACCATTTTTGGCACACCGCTGATGCTTCACAACCACTCAAGTGTTTTATTGAACTCTAATCAAATACTAGTGTTCGGTGGAGGTGGCACCTGCTTCTCCTTTGGAACTCACTATAATGATAAGATATTAACAATTGATTTACCACAATTGGAAATACCACAGTTGGGTGAAAGTACTTCAGATCAGTCAGCCAGTAAACAATTGTGA

Transcript

ENSDLIT00000022736

ATTACCGCTCGGCCAGTAATGGCGTAAAGATATGAATTGATTTGTAGTAGAAGTTTTCCATGGATTCTCTACTCTAAAACTTGGACCAAAATGTAGTAAAAGGCTTTACATTAATACCTTAATAGATTGTTCACAATATCACATTCAGCCATGTTTGTGTCCTCTAGTAAAAGGGTCCAAATGACCAATGACAACTCGATTCTCAGCAAATATTCCATGGTCAAAGCTGGATATTTTGAAGATAATTTCATTCAATATTTTGCTGGTAAAGATGCAAGACGTTCTCCAAATATTAACAGGGGCTACTACCTTAGAATGAAGTGTGTGGATCACATGTTAAGGACATTTCTTACATCAGGTTTTCATAAAAAACAAATACTGTCATTAGGTGCTGGGTTTGATACATCATTCTTCAGATTCAATGAAGAAGGTCTCCTAAACGATTGCAGATATTTCGAGATGGATTTTCCAGGTGTTGTAAAAGCTAAGAAAGAAATCATCCATGGAGAACCTGCATTATCTTGTGCAGTTGGCAAGGAAACCAGTGGCATTCTACCTGTTGAAAATCTTTATTCTGACAAGTATGTTCTAATTGGTTGCGATCTAAAATGCAGACCTTCCGTTGAAGAACTCTTACTGAAGTGTAGGATTGACCTCCAATGTCCCACTTTCATTCTTTCTGAAGTTGCAATTTGCTATATGGATGCAACTAGTTCAGGTCTTTTAATTGAACGACTAGGAGAGATATTTGATGCTGCTGTGTTTGTTGCTTATGAGCAGGTCTACCCAAATGACCCCTTTGGTTTAATAATgatgcatcattttgattttaaaatgaaatctcCACTACAGACAATAAGCTCTTTTCCAACACCAGTATCACAGATGGAACGTTATATGACAAAGGGTTTTACCCATGTTCAATATGAAGACATGCTGTCCTTCCAGTTATCAATCAGCAAGGATGAGAGAGAATACTTACAAGGCTTGGAAGTGTTTGATGAATTTGAGGAAATGGACTTGAAGTGCCTCCACTACATGGTGATCTGTGCCTTCAAAGCAGCGTGTTTGGAGTTAGCACCGAAGATGCTTACAAACAGTACAACAAATgATAATTTAGAAGAGGATTTGGCGAAAAGTACAAAGATCTTTGTGGATCCAGATGTGTTGATGTCCTCTGTACCACATGATTGTATTTTGAGGTTTGGCCATACAGCCAACATTTTGCTGAGTGGCGACATTATAGCTATTGGTGGCTTTGGTAAATATCATGGCAAACATCACAAGAGACTGTCAAGAATTGCtgttataaatataaacattggTTGTCGTTGTTGTCAAGATTTGTGTGAGTCTAATGATGAAGAGAGAGAAGGTGATTCATGGCGATGTAAGACATATGATGGTTATATTGATTTAGgTTCAAGAATGTACCACACCACTACACTTCTTAAAGACTCTACATTGTTAGTGTTTGGAGGCCGGGCATCACCATTCAGAGCATTTAATGATATTGTTTTAATCGGACATGACACAAAGAATGAGCAATTTAATTGCTATAAGTTAGAGACCAATGGGATTGCACCATCTGGCAGGTGGAGGCACAGTGCTACCATATTTGAAGATGGAGACGGAGAAAAGCTGTTAGTATTTGGTGGCAGAACTACTAAAGAAATGGCTTTAAATGACTGTTATATTCTAGACATTGCACAGAAAATATGGAAAAAGGTTGATTTACAGGGAGACAACGTCATAGCAAGACATTCTCATAAGACCTGTTTATGGAAAGATGACCGTATTGTTGTTAGTGGGGGTCTCATGGGAAATGGCAAAGCTTTATCCTTAGTACAAGTTATTGATGTCAAGacaAAATCAATGTCCACACTAAATATTCAACCTCCTTTATTAACAAGATATTCCCATACAGCTCATATGGTCAATGACCACCTAATTATGGTTGGAGGTGTTCACCAAATATACACAGGGTCTAATACAATAGCTGTCGTTGATCTGGTATCACTCACATCAAAGCTGTTTTATTTACCAgtTACCATTTTTGGCACACCGCTGATGCTTCACAACCACTCAAGTGTTTTATTGAACTCTAATCAAATACTAGTGTTCGGTGGAGGTGGCACCTGCTTCTCCTTTGGAACTCACTATAATGATAAGATATTAACAATTGATTTACCACAATTGGAAATACCACAGTTGGGTGAAAGTACTTCAGATCAGTCAGCCAGTAAACAATTGTGATTGCTACCTTTAAATACATGAATGACACAAAAATGTTATGCTTGAACCCTGATCACAAGCAAGAGGAGCAGCTTCTAGCCCAAAATACTTGCTTACGCTAGCGTAAAAATTGTCATTATCTAATTTCAAACAGAGGTTATGTCACAAGCAAGCTCAACAGCCTTGTACCAAAAGGCTTCTTTACTTGGCAGTGCAAAGTTCACTTTGGACCAAGATTGCCTCCTATTGTGTACATCTGGAATGATCACACCAAATCCAGACATACtaatttcattcaaaagtcCGAGTGGATTTGTTTTCTGCCTAGAATAGATGCAACTCAAATACACTAATGCATcacttcaaaacaatctttTACACATAAAAGGATCATTGTCATTGGGATCAAATCAATGGCAATTAACAGGAAATCAtgcaaagaaaatttattCTAATTATAAGTGGGATATTTATCACTATTATTTAACTACATTTACACATATCTCCACAACCCAAACTTGGTCATATTTCTTAGTAGATTTGACAAATCTACCCCCACATAAACAAAGTGTGATGTCATAGTGCAATAGCATAACTTTGGAAATAATTTTGGAATCTCACtattgaatattaatttattgttgcCATAGTTATCACAGTGAAATAAAAGTACTTCTCATCAATAATCTAGTACATATTGTTTGTGATGCCATTATACATAATCTTTGCAGTATTTTATCTTACAGCTCATATTTATTTGTCACGCCGTTTTTCCTAGTACGATCCATGTTTCTTAACAGTCTTGGGTATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60294	tRNA wybutosine-synthesizing protein 4 OS=Homo sapiens OX=9606 GN=LCMT2 PE=1 SV=3
Q5XIA3	tRNA wybutosine-synthesizing protein 4 OS=Rattus norvegicus OX=10116 GN=Lcmt2 PE=2 SV=1
Q8BYR1	tRNA wybutosine-synthesizing protein 4 OS=Mus musculus OX=10090 GN=Lcmt2 PE=2 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001733 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04072 all species →	LCM	Leucine carboxyl methyltransferase	Family	Interproscan
PF13418 all species →	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR007213 all species →	Family	Methyltransferase Ppm1/Ppm2/Tcmp	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46529 all species →	TRNA WYBUTOSINE-SYNTHESIZING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008175 all species →	Molecular Function	tRNA methyltransferase activity	Interproscan
GO:0030488 all species →	Biological Process	tRNA methylation	Interproscan
GO:0031591 all species →	Biological Process	wybutosine biosynthetic process	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0032259 all species →	Biological Process	methylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15451	PPM2, LCMT2, TYW4; tRNA wybutosine-synthesizing protein 4	EC:2.1.1.290 EC:2.3.1.231	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.