Gene detail

Detailed information of ENSDLIP00000021820.1 in Diadumene lineata

Genomic Location: not available for this species
NR annotation: XP_020899850.1, tubulin beta chain isoform X1 [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Sequence

CDS

Transcript

ENSDLIT00000024135

CTCCTTTCTGGTTGGTATCTTTGAGTGAAGAACTCAATAATTGATATCACGAACCAAAATCCTCGAATACATGGCTTTTACAAGACCAAGTAACTCTCAAGTAAACTAGCAAAGATGAAGGAGAATTGTGacattttgtctttctttttttacccCGAGATAAATGCAAAATGCGCGAAATAATCAACGTCCAAGTTGGACAATGTGGAAATCAGGTGGCCTACAAATTTTGGGAGCAAATTTGTGAGGAACATGGACTCGACGCGCAAGGGAAATATCTTggaaattataataaacagctTGAAAAAATCGATGTATATTTCTCGGAGGGCTCGGacgAGAGATATGTTCCTCGATCTGTTCTCGTCGATTTGGAATCAGGAACGATGGATTCATTAAGGTCATCGTCTCTTGGCCATCTATTTCGACCAGATAACTACATATTTGggAAATGTGGTGCTGGAAACAACTGGGCAAAAGGTTTCTACTCGAATGGTTGCAACCTAATCGAAGAAGTACTCGACTGCATACGAAAAGAAGCCGAACACTGTGACTCGATACAAGGCTTCATGCTAACACACTCCCTAGGGGGTGGTACTGGGTCGGGTTTAGGCACCCTTATACTTTACCACTTACAAGAAGAGTATCCCGATCGCATTCTTAGCTCAGCTAGTGTCTTTCCTTCGCCTAAAGTTTCAGAGATTGTCGTGGAGCCGTATAATGCAATGTTAGCGCTGCAACAGTTGATAGAGACGACGGACGAAGTGTTCTGTATAGACAATGAAGCGTTGTACGATATATGCTCGAGAACTTTGAAACTTAATTATACGACTTATACGGACTTGAATCACTTGATTGCGAACACTATGAGTGGGTTAACAACGTGTTTGAGATTTCCTGGCCAGCTCAACGCAGACCTACGCAAGCTGGCAGTCAACATGATACCATATCCTAGACTACACTTCTTCATACCAGGCTTCGCGCCTTTAACAAGTAGAGAATCAGCTTCATATAATGCTATAACAGTCAGTGAACTTACATCTCAGATATTCGACCCTAGAAACGCTATGATAGCTTGTAACCCAAGACATGGCAAATATTTAACATTCGCGGCAATGTTTCGAGGCATGGTCTCTATGAAAGAGGTTGAAAAACAGCTTCTTCATCATCAGAATAAAAATAGTTCGTTATTTGTTGAGTGGATTCCTAACAATGCTAAGGTTGGGGTATGTGATGTTCCCCCTACAAATATGAAAATGTCAGCAACGTGTATTGCTAGTAACACGGCTATCCAGGAATTGTTTAAGAGACTATTGGACCAGTATAGTGTTATGTATAAGAGAAGAGCGTTCGTCCATTGGTTCACAGAGGAAGGAATGGATGAGAAGCAGTTTTCTGAGGCTGAGAATGAAGCTAAAGATCTAATATCAACGTACCAACAATGCCAAGACTTGAAGGTTGATTCAGACATTGATGATCTAGAAATCACCGATCTTGAAATATATGACGACTCACTGGAAACATGGGACAGTTTGGATGTAACAAGTGATTCATTGATGAGTGGACCTATAAATACATAGGTAGCGTTGGAACATTCAGGTGTTACTGGCGACTTTAAATAACCTGCTTGACGCAGCGTATAACAAAAGGTCACAAGTGGAAATGGGCGATTTGTTACTGAGTGCGGAAATAAATAGCTAGGGGGTGGTGTTGAAAGACTCTGCTCTTTAAATTAACACGACTTCAAGTCGTTTGAAGTGAATTTTAAAAGCCTTCATAACGGAAATTAGGACGAAATCCAGAAAAGGAATCGGTCGGTTTATTaacatatataaaaatatttggtataaTGCAAATACAACGTTTTTTTTGGGAGATTAATCAAAACTGtgactttgatatttttgtgaatCACGTTGCGACTGGTTGATTATGAAATTATAATTAGgatgttgttggtgatgatggcattGGTGGTGGTTAGCAAAATGTTGATGaatatgatgacaatgatgacgatgatgacaatgatgatgatgataatgacgacaatcagatgatgatagtagttgTAATAGATGCTTATCTACCTCGATATTTTTACATTAGCATATTTTGTAAAGCATTGTAAAAACCTAGAATATAGGCGGATAAAAAAGGTAGATTTTCGACGATTTAGGATCAGTGAGGATCTGTGTTACCCTAGCAAGTAATGAACGTTTctgtttaaaataataaaatgccTCCAAAAATGTATAGGTACTAATGCAACAATATGACGTAATCGGGTAATATTAGTAGCTGCATGAAAGTGAGGGTAAGAAATGTAGCTACAGCCTGTAAAATGGTGTTCCTTTAATAGTTGAGCCCGTCTCATCCAAAATATGGTTTATTTTCGAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q24560	Tubulin beta-1 chain OS=Drosophila melanogaster OX=7227 GN=betaTub56D PE=1 SV=2
Q27U48	Tubulin beta-1 chain OS=Glossina morsitans morsitans OX=37546 PE=2 SV=1
Q2HJ81	Tubulin beta-6 chain OS=Bos taurus OX=9913 GN=TUBB6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000512 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03953 all species →	Tubulin_C	Tubulin C-terminal domain	Domain	Interproscan
PF00091 all species →	Tubulin	Tubulin/FtsZ family, GTPase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000217 all species →	Family	Tubulin	Interproscan
IPR013838 all species →	Binding_site	Beta tubulin, autoregulation binding site	Interproscan
IPR018316 all species →	Domain	Tubulin/FtsZ, 2-layer sandwich domain	Interproscan
IPR003008 all species →	Domain	Tubulin/FtsZ, GTPase domain	Interproscan
IPR008280 all species →	Homologous_superfamily	Tubulin/FtsZ, C-terminal	Interproscan
IPR023123 all species →	Homologous_superfamily	Tubulin, C-terminal	Interproscan
IPR036525 all species →	Homologous_superfamily	Tubulin/FtsZ, GTPase domain superfamily	Interproscan
IPR002453 all species →	Family	Beta tubulin	Interproscan
IPR017975 all species →	Conserved_site	Tubulin, conserved site	Interproscan
IPR037103 all species →	Homologous_superfamily	Tubulin/FtsZ-like, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11588 all species →	TUBULIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0005200 all species →	Molecular Function	structural constituent of cytoskeleton	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0007017 all species →	Biological Process	microtubule-based process	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDLIP00000021820.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.