Gene detail

Detailed information of ENSDLIP00000022433.1 in Diadumene lineata

Genomic Location: not available for this species
NR annotation: XP_020901503.1, uncharacterized protein LOC110240061 [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Sequence

CDS

Transcript

ENSDLIT00000024791

GCGGAAGCTGTGCGGAAGAGTGTTCGTGGATCTGCAAGAAACAACCCAAGTGAATATCAAAAAACGAGTTGAATTCGTGATAATTTTCGAGTAAAAATGCGTAAAAGTGCTAGGATAGCATCAAATCTAATAAACGGAGCAGCAAAAAGCTCACCAAAGCGAACTAGAGAATCAATTCCAAGCATTTCTGAGATCGACCACGCTTCAAAGGAACAGTCAAGTGACCGAAAACCTGCCAAGAAACGAGCTAAAAGAGAGGCAAAACCAACTaataaagataccaaaacggAGTCAAAACCATCCTCGATAGGTGttaaatctgaaaaaaatgatgcCCCGACACTAAGCTGCAAAGATGCTACAAATATCAAGAAAGAGGATAAAGAAGTTCCCAAACATCGCAAAGTCGAGTCGTCCTCGCCATCACAAACTGAAACTTCATCTCCCAAAAACTATTCATCTTTCGAAAACCAGAAGTTTATAGGAGCTCATGTTTCTATCAGTGGCAGCTTATGCAATGCGGTTTACGAAGCAGTGGAAATCGGAGCTAAAGCTTTCGCAATGTTTTTACGTTCGCAAAGACAATGGAAGAGCAAGCCTTTGGACGAAAATGTGGCTGAAAAATTTCGCGAAGCATGTGTTTCTCATGGATTTTCTCCAAATTACATCCTTCCCCATGGTATCTATCTCATGAATTGTGGATCTCCTGACGATGAAACTCTTGCTAAAAGCCGCGAAGTTCTCGTTGAAGAGCTTCAGAGATGTGAAATGCTTGGCTtgattttgtacaattttcaCCCAGGATCAACTTGTGGCAAGATTTCTGTAGAGGAGTGTCTTGACAGAATTGCTGAAAGCATCAATATTGCTCACAGTAAAACTAAATCTGTTATTACTGTCATCGAGAACATGAGCTGCCAGGGAAATACAATTGGGGGCAAGTTTGAAGAGCTGCGAGGAATCATCGACCGTGTGAAAGACAAGTCAAGAGTTGGAGTATGCTTGGATACATGTCATTCCTTTGCGGCAGGGTATAATATCTCAAACCAGAAAGGGTATGACGAAGTAATGAATGACTTTGACAATATAGTAggttttaaatatttgaaaggAGTCCACCTAAATGACTCCAAGGGTGATTTAGGATGTCATTTAGATCGACATGAGAATATCGGCAAAGGAAAGATTGGTAAGGAAGGTTTTCGTCTTTTCATGGAAGATGAAAGATTTGATGGTATTCCCATGATTTTGGAAACCCCTTGTGTCAATGATAAGACTTACACAAATGAGATAAAAACTCTATATTCAATGGTTCCCTAAGAGCATGCTCTGTAAACATagaaaaagtatttgaaaaaatactaTTTGACATTGATCGGTGAGGCAACAAgtctttgtaaatgttttcCCAAGGACACGCTAAGGACAATAAGGACAACGTTGGTTTTCCCAAGGACAACATTTGCACAGAAGGATTTTAGGAAGACTGGCAACAGTTTTGAGAAAGGAAGGATGCCATGGTTTTACACAACTTAAGTTGAGTTTCAAGCCTGAACAGTTTAATATTCTTGCTGATATCATACATTatgataatcaatcaatccatactgctacatttttgtaaattaaaaacaatgagatataaatagataaacacAATTAAAAGAACATTTACTTTTAGGTACTCAATATACATATGTGATCAGTGATAACTTAGCATGCACACTTCTACATCTACCatgacattaaaaatatttaaatatggCACTCAATACACATGTATGATCAGTGATAACTTAGCATGCATACTTCTATATCTAccataacattaaaaatatctaaatatgGCACTCAATACATGTGTGATCAGTGATAACTTAGCATGCATACTTCTAAGCCTAATTTTCAACTAATCAGCAATTAAGCTGCACTGTTTTGCTGACAGATTTAAATATAGATATTTTAGAAGATGAAGTACATTATTTGGATCTTAGAAGATAAAAGTGCAAATCTATGGATTAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5LG28	Probable endonuclease 4 OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / LMG 10263 / NCTC 9343 / Onslow / VPI 2553 / EN-2) OX=272559 GN=nfo PE=3 SV=1
Q64WY5	Probable endonuclease 4 OS=Bacteroides fragilis (strain YCH46) OX=295405 GN=nfo PE=3 SV=1
Q10002	Apurinic-apyrimidinic endonuclease OS=Caenorhabditis elegans OX=6239 GN=apn-1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008775 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01261 all species →	AP_endonuc_2	Xylose isomerase-like TIM barrel	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013022 all species →	Domain	Xylose isomerase-like, TIM barrel domain	Interproscan
IPR001719 all species →	Family	AP endonuclease 2	Interproscan
IPR018246 all species →	Binding_site	AP endonuclease 2, zinc binding site	Interproscan
IPR036237 all species →	Homologous_superfamily	Xylose isomerase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21445 all species →	ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003906 all species →	Molecular Function	DNA-(apurinic or apyrimidinic site) endonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006284 all species →	Biological Process	base-excision repair	Interproscan
GO:0008081 all species →	Molecular Function	phosphoric diester hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10771	APEX1; AP endonuclease 1	EC:3.1.11.2	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.