Gene detail

Detailed information of ENSDLIP00000022757.1 in Diadumene lineata

Genomic Location: chr4:12112154...12123449
NR annotation: XP_020910782.1, uncharacterized protein LOC110248581 [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSDLIT00000025140

ATGATCTCCAAAGATATAGTTATTTCATGGTTTAAAGGTCTAAATGGCGATGACAGAATAGAACTCATGTGTTCCTTGCTCGACTACTGCTTGCCTTCAGAAATTCGCTTCATCGGCACATACCTAGAATCATCGGCACAGAAAGACTACTACGGTTTTCGCAATTTTGAAAGTGTAGCGAATAATCCCAACGATTTGACGTATTTGTATCCATTAGAAGACGTTATCATACGACGGCGGTTGTGTTTGTATATTGCCCTTCTGCATTCGAGTAATCGACAAGCTGCCGCAGTTTTGTTCGGTTTACTCAGCGAATTTCAACCCTCAGGAATCCTTGATGATGAATGCTTAACTGAACTGTCGCTACTGTACACGCTGGCAGCAAACCATCCTGCATTCTCCTTCAACCAAAAGCATGTATTGAGAGCTAAGCTGAAGTTTTTGCGTGTGCAAGCAGTCATCTCCACTTCAGACTTAGGAGAGACTATTTCAGACTGCAGTACTGGCAGTTCTCCGTTTCTTCAAGATGCGGAAAATATCGAAAGTCCTTTTTCGACGTCTCCAACTTTGGAACAGCAAGAAACACAAAGTGACAACATAAACCGCGCACCGGCGgcaaaagaagaagaagaaaaaaatgacgAAAATTTGCCTTCCGCGATTCCCGAAAATCCCCCTAAAGtaTATGTCAAAGAACTGAAAGTTATaaacatccagaaaaaagAATCTAAACATAGACATGACTCAAGGAAAAAAGAAGACTATGAATATATCATTGAGgTATCCTGGTCCGATGGGGGAGTTGATAAGATTCACAAGTCATACGAAGAAATGTTTGATTTTCAGTGCAAACTCCGTAAGATGTATCCCACtaaaattgatgaaaatggACAACCCTGGAAACTGCCTTTTTTACCAGGAAGAATAAGAATTTTCAACAAATCTGAACACAAAGGAGAAAGGACTCCAATTCCTGACATCAGTGAATATACAAGGTTGTTTGGTTCTTTGCCAATGTTTGTACGTGGCTGTGACCATGTGCTGAGTTTCTTTCACAccaataataaatcaaaaggaCGTGAAAAGAAATCCAAAGCTgccaaaaaagaagaaaagagaaataaacAAGAAGCTGCCAAGAAGGAAAAGAATCCTGGGACTAAAGAAAACTGTGCAACAATTGTTgaggaagaaaaagaacaatttcaCACATCAGAAAATACTACTTCTACTACGGTGACAAGTACAGCCATTACTATTAAAACTCCTATCCCATCAGGCATCAAATTATCCACAGAAAAATCTAACAAAACTAATGAACCAACAAAACCTGTAAATGGATTGATAACTGATTTACATAAAGACCAAGAAACAACCTCATCTCTTGTGAaccaaatacaaaacaaaaatggactCATCAAAGTAAACACGTCATCTGCACTGCCTACAACTTCAAGCCTTGGTCCTACTATCAGCACAGCAGTATCTAATAAGCTTGACTCAACTTCTCTGCTTACAACTTCTCTACAATCTAACCCTTCAACACTCTTTCCTGGCTCAATCTCCATTCATAGTCATTCTTCAACGTTGTCATCCAGTAACTCTATAACTACTCCACGAACTATGGAAGCTTTACATCGTCGTTCatatatttcttctttttgcaACCCTTTGATAAACAATCAGACAAGCACAAGTAGTCTAGGGTGGATGTACTTTAGCACCTGTATGGCGTCGCTTAATGTACAGGATTGGTTGAAAAACTTACGTCTGCACAAGTATTCAGAGACCTTTCATGGGAAATCGTTCAATGAGATTCTCAAACTCAGTGAcaaagaacttgaaaaacttggtCTGACAGCAGGTGCCAGACGAAAGCTGAGGGTCAACCTTGAAATATTAAGAAAACGAGGCTGTTTCAGTTCTGATGGCCAAAAACTACTGGATGTTCTTCCTGTGACAAGCAAAGACTTCATGTCATATACTGGATGCAtggatggtgataatgatagagTGTTTAGTGAAAGCGACAGCGATTGTGGAAGTGACACTTTATCTGAAATTTACTCACttGTTCAAAAACCCTCCCGACCAAATGGCTATAGAGTGTCTTGTTATAACTGTGGCAGTTTAGGACATGTTGGAGGACATTGTATGGCACCGAACATGGAAAAAAGATTAAGCTTTGGTTACAGACTACGATTGGACAGTGCACCCCAAGTGctacaataa

Transcript

ENSDLIT00000025140

GTAGAATTTCAAAGTCGCGGCAAAACAGAGCTCACATTATGTTGGAGTAATCTGGTAGTAGATCGTTGTAGCTAGTTTATAGTTACTTGGTTGCTTAGCTAGTTGCAATTGAAATGATCTCCAAAGATATAGTTATTTCATGGTTTAAAGGTCTAAATGGCGATGACAGAATAGAACTCATGTGTTCCTTGCTCGACTACTGCTTGCCTTCAGAAATTCGCTTCATCGGCACATACCTAGAATCATCGGCACAGAAAGACTACTACGGTTTTCGCAATTTTGAAAGTGTAGCGAATAATCCCAACGATTTGACGTATTTGTATCCATTAGAAGACGTTATCATACGACGGCGGTTGTGTTTGTATATTGCCCTTCTGCATTCGAGTAATCGACAAGCTGCCGCAGTTTTGTTCGGTTTACTCAGCGAATTTCAACCCTCAGGAATCCTTGATGATGAATGCTTAACTGAACTGTCGCTACTGTACACGCTGGCAGCAAACCATCCTGCATTCTCCTTCAACCAAAAGCATGTATTGAGAGCTAAGCTGAAGTTTTTGCGTGTGCAAGCAGTCATCTCCACTTCAGACTTAGGAGAGACTATTTCAGACTGCAGTACTGGCAGTTCTCCGTTTCTTCAAGATGCGGAAAATATCGAAAGTCCTTTTTCGACGTCTCCAACTTTGGAACAGCAAGAAACACAAAGTGACAACATAAACCGCGCACCGGCGgcaaaagaagaagaagaaaaaaatgacgAAAATTTGCCTTCCGCGATTCCCGAAAATCCCCCTAAAGtaTATGTCAAAGAACTGAAAGTTATaaacatccagaaaaaagAATCTAAACATAGACATGACTCAAGGAAAAAAGAAGACTATGAATATATCATTGAGgTATCCTGGTCCGATGGGGGAGTTGATAAGATTCACAAGTCATACGAAGAAATGTTTGATTTTCAGTGCAAACTCCGTAAGATGTATCCCACtaaaattgatgaaaatggACAACCCTGGAAACTGCCTTTTTTACCAGGAAGAATAAGAATTTTCAACAAATCTGAACACAAAGGAGAAAGGACTCCAATTCCTGACATCAGTGAATATACAAGGTTGTTTGGTTCTTTGCCAATGTTTGTACGTGGCTGTGACCATGTGCTGAGTTTCTTTCACAccaataataaatcaaaaggaCGTGAAAAGAAATCCAAAGCTgccaaaaaagaagaaaagagaaataaacAAGAAGCTGCCAAGAAGGAAAAGAATCCTGGGACTAAAGAAAACTGTGCAACAATTGTTgaggaagaaaaagaacaatttcaCACATCAGAAAATACTACTTCTACTACGGTGACAAGTACAGCCATTACTATTAAAACTCCTATCCCATCAGGCATCAAATTATCCACAGAAAAATCTAACAAAACTAATGAACCAACAAAACCTGTAAATGGATTGATAACTGATTTACATAAAGACCAAGAAACAACCTCATCTCTTGTGAaccaaatacaaaacaaaaatggactCATCAAAGTAAACACGTCATCTGCACTGCCTACAACTTCAAGCCTTGGTCCTACTATCAGCACAGCAGTATCTAATAAGCTTGACTCAACTTCTCTGCTTACAACTTCTCTACAATCTAACCCTTCAACACTCTTTCCTGGCTCAATCTCCATTCATAGTCATTCTTCAACGTTGTCATCCAGTAACTCTATAACTACTCCACGAACTATGGAAGCTTTACATCGTCGTTCatatatttcttctttttgcaACCCTTTGATAAACAATCAGACAAGCACAAGTAGTCTAGGGTGGATGTACTTTAGCACCTGTATGGCGTCGCTTAATGTACAGGATTGGTTGAAAAACTTACGTCTGCACAAGTATTCAGAGACCTTTCATGGGAAATCGTTCAATGAGATTCTCAAACTCAGTGAcaaagaacttgaaaaacttggtCTGACAGCAGGTGCCAGACGAAAGCTGAGGGTCAACCTTGAAATATTAAGAAAACGAGGCTGTTTCAGTTCTGATGGCCAAAAACTACTGGATGTTCTTCCTGTGACAAGCAAAGACTTCATGTCATATACTGGATGCAtggatggtgataatgatagagTGTTTAGTGAAAGCGACAGCGATTGTGGAAGTGACACTTTATCTGAAATTTACTCACttGTTCAAAAACCCTCCCGACCAAATGGCTATAGAGTGTCTTGTTATAACTGTGGCAGTTTAGGACATGTTGGAGGACATTGTATGGCACCGAACATGGAAAAAAGATTAAGCTTTGGTTACAGACTACGATTGGACAGTGCACCCCAAGTGctacaataaatattattatcacatttacagtAAATATTTTCATACAGATCCCACCAATTTATACAAAATCAATAGAAATGTGTGTTACTTTATTTATCGCCAAATAAGAACATTATTCCCAAAGAcatatttttctcaatttttcatttatttcaaaatatattaaatgcataatacttatgaaatgtaaataatattcTATACTTAATATATATTGTAGATAGTTTCAGTTTGGTATTTGAAGGAAGATAAGGATTTTCTAgttcatattattatatatccAAAGTATTCATAAAGTGTTTGTGATTTCCTGGACAAGTGCTGTCTTGAGAAAGATTCACTAAAGACTGTTGGTGATATGATTCTCACCATTGACATATCTCACACTTTATTACCAGTAATTACATCAATGATACAAAAATTTcacattgaaattgaattattatatatacctATTTCGAAAAATGTTATTGGAGGAAAGGGAAGGGAATACCAGTTTCTGGCTGTAGATTGCACaaccgaaaggtactgtgggctttcaataaatgataagaaataagaagTAATTTTATCCAAATCACTGTCATTTCTTTCAGTTGAAGATCCCAGATGGTTGATAAAATGTTATATTCTGTAGCTGTTTATTAAATAAGAACATTACCCATAAACCTTTTCAGTTGTGTAATCGGCATCTGCAATCGGGTATCTGTCATTCTCAccaacaataattttttttaaataggtttATGTTATTGTTTATATTCCCAGCTTTGAGCTGGAGAACACTGCATATTATATATCTATTCCAAAGTGTTATAGGGAtggtttttttatgtatactAGACCATCTAAGAGTTCTTAGTAGTTTCAAATGCCTTTTCATTTGGAAATCATATGATCAACATGATATTTGGAAACAGATGTATGCTAAAGTAGAAATGTTTACCTTGTCTTCATGacataatattaataattcagaattcatattttgaagtgtttcaaacttta

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q758Y4	RNA-binding protein VTS1 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=VTS1 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005794 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00787 all species →	PX	PX domain	Domain	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR042344 all species →	Family	Zinc finger CCHC domain-containing protein 14	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16195 all species →	ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDLIP00000022757.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.