Gene detail

Detailed information of ENSDLIP00000023136.1 in Diadumene lineata

Genomic Location: not available for this species
NR annotation: XP_020901496.1, nuclear pore complex protein Nup85 [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Sequence

CDS

ENSDLIT00000025539

ATGGATGGCGGTCCTCCAATCACGCAGATACCTATTTGTGAGGTTGGTGGTAAGTTAACTGGTTGTTGGTCATCAGTTGGTGCAATTTCTGTCTTTGCTTCTGAAGGAAAACCTTTGTCAGCAAGGTCATCAGATCATTACAGACTTTCAACATTAAATGAAGTGAGATGGCATGCAGATGTTTATGATACATTAATGCGTAAACTCATCAATGAAACACATGGGATATTTTTAGACTTACAGCAGTTGTCTGAGTATAGCAATACTGCTAAAAAATCAAGtttgttgACAATATGTAGACGGTACCGGGCAGTGTTGAGAGCATGTCTACTGCAGTTAAAAGACCAATCAGaATCGATGATCATTGATGAAAACCAACATATCAACCCCCAGaaacaAATCTTGTCTTATGTTGAGCTGATCTGGCATCTGTGTGAAATACTTTTTGTTGAAACCCTCCCAGGTGGGGCAGCTCTCCCTAGACTACTAGAATGGGCCAAAACAGAGCAAACTGACAAGTTTATATCAGAGGTTGCACAGAGCGCTGTACCTCATGAAAGCTTTCATTACTGGCCAGCTATTTATTGTCTTGTATTACGTGGACAGTTGAATGATGCCAGAGCATTGCTAGCACAGCATACAGACAAACAGATGGGAACCTATGATGTATTTGAAAGTATTGATGAACTCATGAGAAAAATGCCAGTATACCAGaCATACACTGGTCAAACAATGTCAGAGTTTTTAATGCGATGGAACAGTTGGCAGCATGAATGTAAAGAACAGCTAGAAAGTGATACTTATGCATCTAATCCACAACTAGAAACTATTTGTCAGATTCTTGCTGGCCAAGAAGAAGTATTTGAAAGTCTAAAGGATTCATGTCCAACATGGTATCAGATGTTGACAGCCAAGCTTCTGTACTGTAATCCTGCTGTGAAAGTGTTTGACTTACAGTATCACACACAGAGTTGTATCGAGATGTATGGTGGCAATGATCAACTTGGTGCTTTGGACAGGATATTACTGTCTGCTTTTGAGTTTGATGTTTCTGCTGTTATTAAGGAAAGCAGTGAATGTTTGGGTAATTGGTGGTTTGTAGCACATCTTACCGATTTGCTGCATCATGCTGGGCAATTAGACTCCAATCATATAAGttcacCAATAACTCTTAGAGAATTTCTTCTACTGGAGTATTCAGCAAGTCTGATGTCCCATCACAGTCTCTGGCAGGTTTCTGTAGACTATTTGAGACATTGTCCTGAATATGGAAGAGCACATCTTGAGGAATACATTGCTCATCTTCCCCTTGAGACAGAGAAAAAAGCTTTGAAGGTGTTAAGACTATGTGAGGAGCTTGACATGACAGTACAAGTTCAAAGTATTTGTAAGACTATTGGTATGCAAGCTTTGAAGAGAGGCAGATTGGGATCTGCACTTAATTGGTGTTTAAGATCTAAGGATTctgcatttgcagcatttATAGCGGACAGATTTCTAGAAGGCTACATCAAGTCAGGCAACTTTACAAACCAAGACCTTATTGATAATCTTGGTTCAGCCATGCTTCTAAGTGACAGACTAACATTCCTTTGTAAATATCATGAGTTTCACAGGATGTATGAAGATTGTCAGTTTAGAGAATCTGCTGGTCTTCTTGTGTCACTTTTAACTTCAAAACTTGCACCCAAAAGTTTATGGCTAACACTGCTAACAGACGCTCTGCCTCTCTTAGAACATGAAGAGGTTATATTCAGTAGTAATCAAACCTATGAACTGTTACACTGTCTACAAGAGATCACTCTCTCATTTCGATCAGCGGAGTACCTCTTTACAACCGAGGAACtggaagagaaaaataaacaaaaaaacaaacctggaaagaaaggaaaaaatcccaaaacaaaaaagagTGAACCGACCGACGAAGAGCAAGAAAAGATATCTCTTTTGCGTCTTGCACTCGGTAGAAACCTGGCTCGCGCCATCTTGAAGGAAGGGCGAAGCATCAACACTACCGTTTGA

Transcript

ENSDLIT00000025539

GAAGTACATACCCAAAAATCCAGCATGGATGGCGGTCCTCCAATCACGCAGATACCTATTTGTGAGGTTGGTGGTAAGTTAACTGGTTGTTGGTCATCAGTTGGTGCAATTTCTGTCTTTGCTTCTGAAGGAAAACCTTTGTCAGCAAGGTCATCAGATCATTACAGACTTTCAACATTAAATGAAGTGAGATGGCATGCAGATGTTTATGATACATTAATGCGTAAACTCATCAATGAAACACATGGGATATTTTTAGACTTACAGCAGTTGTCTGAGTATAGCAATACTGCTAAAAAATCAAGtttgttgACAATATGTAGACGGTACCGGGCAGTGTTGAGAGCATGTCTACTGCAGTTAAAAGACCAATCAGaATCGATGATCATTGATGAAAACCAACATATCAACCCCCAGaaacaAATCTTGTCTTATGTTGAGCTGATCTGGCATCTGTGTGAAATACTTTTTGTTGAAACCCTCCCAGGTGGGGCAGCTCTCCCTAGACTACTAGAATGGGCCAAAACAGAGCAAACTGACAAGTTTATATCAGAGGTTGCACAGAGCGCTGTACCTCATGAAAGCTTTCATTACTGGCCAGCTATTTATTGTCTTGTATTACGTGGACAGTTGAATGATGCCAGAGCATTGCTAGCACAGCATACAGACAAACAGATGGGAACCTATGATGTATTTGAAAGTATTGATGAACTCATGAGAAAAATGCCAGTATACCAGaCATACACTGGTCAAACAATGTCAGAGTTTTTAATGCGATGGAACAGTTGGCAGCATGAATGTAAAGAACAGCTAGAAAGTGATACTTATGCATCTAATCCACAACTAGAAACTATTTGTCAGATTCTTGCTGGCCAAGAAGAAGTATTTGAAAGTCTAAAGGATTCATGTCCAACATGGTATCAGATGTTGACAGCCAAGCTTCTGTACTGTAATCCTGCTGTGAAAGTGTTTGACTTACAGTATCACACACAGAGTTGTATCGAGATGTATGGTGGCAATGATCAACTTGGTGCTTTGGACAGGATATTACTGTCTGCTTTTGAGTTTGATGTTTCTGCTGTTATTAAGGAAAGCAGTGAATGTTTGGGTAATTGGTGGTTTGTAGCACATCTTACCGATTTGCTGCATCATGCTGGGCAATTAGACTCCAATCATATAAGttcacCAATAACTCTTAGAGAATTTCTTCTACTGGAGTATTCAGCAAGTCTGATGTCCCATCACAGTCTCTGGCAGGTTTCTGTAGACTATTTGAGACATTGTCCTGAATATGGAAGAGCACATCTTGAGGAATACATTGCTCATCTTCCCCTTGAGACAGAGAAAAAAGCTTTGAAGGTGTTAAGACTATGTGAGGAGCTTGACATGACAGTACAAGTTCAAAGTATTTGTAAGACTATTGGTATGCAAGCTTTGAAGAGAGGCAGATTGGGATCTGCACTTAATTGGTGTTTAAGATCTAAGGATTctgcatttgcagcatttATAGCGGACAGATTTCTAGAAGGCTACATCAAGTCAGGCAACTTTACAAACCAAGACCTTATTGATAATCTTGGTTCAGCCATGCTTCTAAGTGACAGACTAACATTCCTTTGTAAATATCATGAGTTTCACAGGATGTATGAAGATTGTCAGTTTAGAGAATCTGCTGGTCTTCTTGTGTCACTTTTAACTTCAAAACTTGCACCCAAAAGTTTATGGCTAACACTGCTAACAGACGCTCTGCCTCTCTTAGAACATGAAGAGGTTATATTCAGTAGTAATCAAACCTATGAACTGTTACACTGTCTACAAGAGATCACTCTCTCATTTCGATCAGCGGAGTACCTCTTTACAACCGAGGAACtggaagagaaaaataaacaaaaaaacaaacctggaaagaaaggaaaaaatcccaaaacaaaaaagagTGAACCGACCGACGAAGAGCAAGAAAAGATATCTCTTTTGCGTCTTGCACTCGGTAGAAACCTGGCTCGCGCCATCTTGAAGGAAGGGCGAAGCATCAACACTACCGTTTGATCGACTTGATGACGCTTATTGGTGAGACAGGTAGATAGGCAATTAAGCTAGTAATGTAGAGTATAAACAGATAGGTAACCACAGAAGTACTCAAAAACACAAGTCAATAATGGGTAGCCTACGTTGAACACCTAATTTTCTTCAGAAAAGTCAGTGTTCAACGCTGGCTAACACAGGACAACAACTTGATCAACCTCAACAAAAGCAGTTTGGCTGGGAATGTGGCTCCCAACACTACTTCTCAcgaataattttttgaaagtaaaaactcaaaaaagaATACTGAAAAAGTCTCATGTGATAACATTATTGGTctgaaaacaatgaataaaaagttctttttcatttgtaaaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DK84	Nuclear pore complex protein Nup85 OS=Xenopus tropicalis OX=8364 GN=nup85 PE=2 SV=1
Q68FJ0	Nuclear pore complex protein Nup85 OS=Xenopus laevis OX=8355 GN=nup85 PE=1 SV=1
Q8R480	Nuclear pore complex protein Nup85 OS=Mus musculus OX=10090 GN=Nup85 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003358 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07575 all species →	Nucleopor_Nup85	Nup85 Nucleoporin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011502 all species →	Family	Nucleoporin Nup85-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13373 all species →	FROUNT PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006406 all species →	Biological Process	mRNA export from nucleus	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0031080 all species →	Cellular Component	nuclear pore outer ring	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14304	NUP85; nuclear pore complex protein Nup85	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.