Gene detail

Detailed information of ENSDLIP00000023394.1 in Diadumene lineata

Genomic Location: chr5:17515530...17524376
NR annotation: XP_020899397.1, uncharacterized protein LOC110238092 isoform X2 [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSDLIT00000025814

AAAATCGTGATCTCAAAAAGCAAACAGCTGAACAAGTGACCACCAGCGATAACACTGCATGATAactaaacattatttaaatataCACGTCTCTATTCAACTACTTCACTGGCTAAGACCTTGGCTATGCTAAGACCATGTGGCTTGTGAAAATAGGGACTCAAAATCCAGTGAATCAAAGAAGATCTTCAACCAAGTTTGTGATTTGTGTTGGCGTCATTTTCGTGGCGCTGCTTTGCAATTCCTTGACAGCGGCTGCAAGAAAAGGGTGTAGTAATGTTCTGGGTCTGGAGAGTAAAAAGATTCAGGATTGGCAACTTACATCTTTTTCAAATGACAATGGTTATGAAGCAAGAAATGCAAGACTTAATAACAATGGAGCATGGTGTAGCGACAGTGAGAAAAAATGGACAGAATATCTACAAATACGACTAGACAGAGTGCGCCATATATCTGGTATAGCCAGTCAAGGTTACAAGATGTTCTTTGGTTCATATTGGGTTAAGCAGTATTCCCTCAAGTATAGCTATGATGGATCAAAATGGTATTGGTATAAAGATGGGACTCGTATTAAGGACTTTTCTGCTAATAGTGATCCATCTAGTGTGAAAATGGTGAATCTGCGTGATACATTTGTGGCTAAATATTTGCGAATCTATCCAACAAGCTATAAGGATGACATGTGTATGAGATTAGAACTGTATGGATGTCCAAATAACATAGATTGTACAACCATGGTGTCGGCAAGTTCAGGTGTTATTAGTACTCCTAATCACCCATCACCATATCCATCAGGAATGGACTGTACCTGGATCTTTAACTTACCAgacaaaagtaaacaaatcaAAGCATTTTTTAACTACTTTGATGTCAATAACGGCCTATCTGAGGGTTGCCAAGGTGATTATGTACAAGTGCTTGATGGACCTAGTGACAATTCACTATCACTAGGACGCTTCTGCAATGGTGTAGACTTGCCTTTGCTGACATCATCTGCAAGTGCAATGAgagttcattttcattctgAAGCAGACAGTACACCAAGTCAAGGCTTCCAACTGTCTTACTCTTCAGGTGAAATAAAAAGGACAGCTGCGTGCACAGGGTCTAAGTTAACTCTAAGCTGCTTATTATCAGATAAGACTATCAAGATTGTTTATGCTGCATATGGTAGTTTACCATTCAGTTCCATATGTGGGAGTCTTGTCTCTAGCTCATCATGTAACAGTGCGAACAGTCAGCAGGCCATAGAGAGCAAATGTGAACATTTTAAGACATGTAATATGGATGTATCAAAGGCTGTGTTTGATGGCATGTCATGTGCACCTGGTAAAGTACCTCAGTTAGTGGTGTACTATCAGTGTACTGGCACTGTTATTAGAACTACACCTTCTCAAGCACCTCCTCTAACAACCAAACCATCTGTCATTTCAACCACTGAAATGGTTCAGTCAGTGAAGACAGACGTTGAGACTACCCCATCAGTTGGTGCAACACAAGATGATAAAGGTAACAAGTTGGCCAGAGAGAGCAAGAAAGACAAGAATGGGCTAATGATTGGTATTGTAGTGGCCGTCATCGCTGTGATTGTCATTGTGGTCAtcattttggtttgttttgcTTACCAACGaCGTAgaagacaaaaagaaaaacctgCAGGTGGAGTAGTTTATACAGCACCTTGTAACTCATTTACTGCACCAGCTCCTAGACCTTCTAACCCAGGTGCTGATGATCCTCGTAATTACTGTGATGAAGAACAAGAACATATCTACGACAGCCCTGACCTTCAAGAACCATTGCCAAAGATGACTAACAATCCACTGTATCATGGTTTTGATGACCCACATCCTAACAGTACAAGCTATGAACAGATTGACAAAGACAGACCTCCACCATCATTAGACCCTGCAATATATGACAGTCCTTTACCAGTGACTAGTAGTCCTAGCAAGTCAGCTACTGGTAGATCAATAGCTAACCCCAGTTATGACAAGGGTGTGGTAGAGATATTACAAACAGGCAAATAGCATAATGGTACAATTGTGATTGTTAGTGTACATCAACCAGACAAGAGTTTGGCTCAGCCACATTACATATTAAGAATGTACCAGCCCAAAGAGGTTGTTCAACATGTCAATGTATTGTAAGAGTTATATTTGAGGAACCATTTTAGGACAAAGATATCATATTATcagataaaataattttataacaAATAGTTGGgagtttttagaattttatgtACCAGTAATTTATATTCTTTGTCATACATCAATGAATTGggttataattttcattttaatgcTGTTCATAAATAATATTGTCTAATTGGAAGTTCAAGTTCTAATTACAATGGATACTAATCTGTAGCACAACTTGATGTCAAGGTTTTGTACATGTCCATTGAGCTACAATTTGAATTGAAGCTGCAATTTAATTTCTCTATTCTTGACCTCTACTGGAACTGTACAAGAAAACTCATTTGGGGTTTAAATAATGTATGTGGTATGTATGAAACGTGTTCGTTGATTACCACCACAATGACAGTATATAATGCATGGTGCAGCTCAACGAGGGTCAAACTGAGTGGAAGAGACAAATCCATACTCAGGGTATTAAGAATAAAGGATAATGTTTGAGATATGCATTGGTATGGTGTTGAGGTAAAATATGAATCCCAAGTTTTAGATTATTGAAGAGAAtactttatatttattgttttgtaattagttGGATTTGTATTAAGATATTCTTCAGTTGTAattgagaaaataaatattttcatcatG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WVM6	Tolloid-like protein 2 OS=Mus musculus OX=10090 GN=Tll2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004226 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02140 all species →	Gal_Lectin	Galactose binding lectin domain	Domain	Interproscan
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF00431 all species →	CUB	CUB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043159 all species →	Homologous_superfamily	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily	Interproscan
IPR000859 all species →	Domain	CUB domain	Interproscan
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR000922 all species →	Domain	D-galactoside/L-rhamnose binding SUEL lectin domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR050633 all species →	Family	Neuropilin/Multicopper Oxidase/Coagulation Factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46806 all species →	F5/8 TYPE C DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0017154 all species →	Molecular Function	semaphorin receptor activity	Interproscan
GO:0030424 all species →	Cellular Component	axon	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0098978 all species →	Cellular Component	glutamatergic synapse	Interproscan
GO:0099055 all species →	Cellular Component	obsolete integral component of postsynaptic membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDLIP00000023394.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Diadumene lineata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Diadumene lineata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →