Detailed information of ENSDLIP00000024985.1 in Diadumene lineata

Genomic Location: chr6:13914821...13916802
NR annotation: XP_020901844.1, exosome complex component RRP46 [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9CRA8Exosome complex component RRP46 OS=Mus musculus OX=10090 GN=Exosc5 PE=1 SV=1
Q9NQT4Exosome complex component RRP46 OS=Homo sapiens OX=9606 GN=EXOSC5 PE=1 SV=1
Q9LX74Exosome complex exonuclease RRP46 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP46 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006435 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01138
all species →		RNase_PH3' exoribonuclease family, domain 1DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050080
all species →		FamilyRibonuclease PHInterproscan
IPR001247
all species →		DomainExoribonuclease, phosphorolytic domain 1Interproscan
IPR027408
all species →		Homologous_superfamilyPNPase/RNase PH domain superfamilyInterproscan
IPR020568
all species →		Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR036345
all species →		Homologous_superfamilyExoribonuclease, PH domain 2 superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11953
all species →		EXOSOME COMPLEX COMPONENTInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000176
all species →		Cellular Componentnuclear exosome (RNase complex)Interproscan
GO:0000177
all species →		Cellular Componentcytoplasmic exosome (RNase complex)Interproscan
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan
GO:0016075
all species →		Biological ProcessrRNA catabolic processInterproscan
GO:0034427
all species →		Biological Processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'Interproscan
GO:0034475
all species →		Biological ProcessU4 snRNA 3'-end processingInterproscan
GO:0071028
all species →		Biological Processnuclear mRNA surveillanceInterproscan
GO:0071051
all species →		Biological Processpoly(A)-dependent snoRNA 3'-end processingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSDLIP00000024985.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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