Gene detail

Detailed information of ENSDLIP00000025336.1 in Diadumene lineata

Genomic Location: not available for this species
NR annotation: KXJ18195.1, Usherin [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Sequence

CDS

ENSDLIT00000028039

ATGAAAAACTTAGCTGACTATTCACCGATCAACAGCAGCTCGACTTGTGGAAACCCTGAAATCAAAGTTTGTCGTTCTTCAATCCAATCAAGCTCGCTTGATGTTTGCACTGAAGAAACATGCAAGTTTGCTTGTTGTCCGACTTGCAGTAGCTCTAAACCAGTTCCTACTGATTTGGGAAACATCAAACCTAGTACAGTTATTAGAATTAAGGATGGTCCATCAAGACCAGGGTCTGCGAAGCCTTCATTTACGTTCGAAAGTGCTTCGGATTCTCACATAGATCCTTTGAATCTCGGTCCTGCCATCGACTACACGAAATCAGGTTTTACGGTCAGTGTTTGGATAAAacagaaagacaaaaataaaggAACTTTAATGTCCAAGACCCTGACAAACAGCCAATACAAAGTCATCTTTCAAGTAGAAATACAGAACTACAAAGTATGGTTTTACTATCAGTATGAACGAGACGGGAATACATCAGTAGCAGAGCTAACTCCAATACAAAGCCaaatgcaaaatttaaaaCCAGATGAATGGCATTTGATTACAGTTACTGTTATAAGTAAAtatctgtcatatttcattgATGGAAAGTTGATCACTGCGGCTCTACTTAAGGGAGCTGTTAAAGATCCTGATGGTCGTGTTCGCATTGGACAGAGATACGGAGGTTCAAGTCAGTATGAAGGATTTTTGCAAGATGTATTTCTATATAATATTACATTAACGAACAGAGAGGTCATTGAGCTATATACCGGCATTCTACCCAAAGAGTATGTAGCCACACAATGTCGCTGTCCTCCAGACTATCCTAAAGTCATGGAAGCATATCGTGCAAAGTGCACTCGCAATATTGACTCACCTGGCCAATCAATGTTACGTCTAGCCGACACAGCACATCCTATTGAACTTGCTACTGATGGGGATACTTCCACATACTGGCAGTCGACACTCACTGACACAGCAGTAATATATCTTGATTTAAAGTATGGTGAACAGCAGGTGTTCTACATAATTTTACAATTCTATGGACCCCAGCCATCAGCATTAAAAATCGAGAGGTCACGTGATAATGGCCGTACCTTTGTTCCATGGCAGTACTTTGCTGCCGACTGTACAAAGTCATTTAACATGACCAACAATGGTGCACTCGCTCAACCAGACTCTGTGAACTGCATACAGTTTGAACTacCACTGTCATTTTCCGGTGCACAAATTTCCTTCAAGACTGAACAGCCTCCCCCACCTAGATCTAATGTGCCTGCGCGACCTTTTGGTTCGCCGTGCTCTAACTTATACTGCTCACCAAAACTCTTAGAGTTCCTCAAAGCAAGTCATGTCAGATTCTCATTTTACAACCACACTTTGGTTAAGAATGCCAAGCACAGATACTTTGCATTGAACAGGATCGTAGTAGCTGGAAGGTGTGAATGTTTTGGTCATGGCAAGACTGCTACATACATTGAGGGTAATGTCAGTCATAGCGGCAAGTGTGTGTGTCAGTGTGAGCCATCAACCTATAGCGAAGGAGACAAATGCGACCGCTGTAAACCATTATACAACAACAAGCCTTTCAAAAGAGGAAACAACACCGACAACTCACCATGCATCAAATGTGAATGCAACCAGCATGCTCCAAGCTGCTACTACAACAGAACTGTAGACCCTAATCCTACTTCCAGAACCCTAGGGGGTGGTGGTGTGTGCATTGATTGTCAGCATAATACCACAGGCCGATACTGCGACACCTGTAAAGAGATGTTCTATCGAGAGAGCGGTAAAAGTAAGAGTGCTGTTGATGTGTGTACACATTGTGCATGTACTGGACCTGGTGTTGTGCCTAACATGTTGGACTGTGTTAAGGATAACACAGCACAAGGAAAACTTGCCGGGCAGTGTGAATGTAAGCAATACACTGAAGGACGACAATGCAGCCAGTGCAAACCAGGCTACTATGACTTAAAAGCCGGTCACGCTACAGGTTGTGTGACATGTGGTTGTAATACTGCTGGTACCATAAATGGTAACAAGACATGTCACACAATCTCTGGTCAATGCCAATGTAAGAGTAACGTCATGGGTATCAAGTGTGACACTTGTAAACCTGGCTTTTATGGCTTGAACACGTTAGAACCATCACGATGTACTGCTTGTAGTTGTGATCCATTTGGCTCTCTAAATAAAACTGTCTGCAATTCTATCAATGGACAGTGTCAGTGTAAGCCTGGGTCAAAGGGACTTCGTTGTGATCAGTGTGACGAAGGCTACCACAGTCTAGATGCAAATGGTTGTAAGACCTGCAACTGTTCCAAGGCAGGAAGTAAACCTTTGCTTATCAACAAATGTGATGCTAAGAATGGTcagtgtttttgtaaaactaaCACCGAAGGCATACAGTGTGATCGATGTAGATCTGGCTTTTTCAACCTTTTGGAATCCAATCCTGATGGTTGTTCAATTTGTGCATGTGATCCAAAAGGAACTATGCGGCCAAAGCAATGCACAGGCAATTGCACATGCAAACGTTATGTCATTGGTAAAAACTGCAATCAGTGTCAAATTGGGACATATAATCTGAGTCTGAGTAATCCAGAGGGATGTCAACATTGCAACTGCGTTGCTAAAGGAACCAAAAATCCCGTCTCAGGAGGTGTTTATGGTTGTAGCTCAAACTTAGGAGAATGTAACTGCCTCAACAATGTTGTCGGTAGACAATGCAATTCTTGTGCAGCAATGTACTACTGGAATCCCTCAGGAAAGGGCTGTGTTGCTTGTAACTGTGATTCAAAGGGATCTCAAGGCAGTGGCTGTAATATGACATCAGGTCAATGCCAGTGTAAAGCAAATATTGGTGGACTTCACTGTGATCGATGTCTACCAGGATACTACGGATTTTGTACTGGAAACTGTCAGCCATGTGGTTGTTATATGGCTGGTAGCAAGTCCAATGCATGTGATGATACAGGGAAGTGTACGTGTAAACAGAACGTGGAGGGTAACAAGTGTGATACATGTAAAACAAATACTGTTAACCTACAGGCCAACAATTCGTATGGATGCAGTGGAGGTATGGacgtcattcattcattcatttattcactcattcattcatttgttcattcattcattcattcattcattcatttaatcaatcaaacaaacaattattcattcattcattcattaatttattcattcattcataaaatcaatcaattaatcaatcaatcattcaatcaatcattcaatcaatcattcgatcaatcaatctatcaatcaaccaattattcattcattcatccattcataaaatcaatcaatcaatcactcgttcattcatttttgtattcacttgttatcattttatttttgtgttcatGA

Transcript

ENSDLIT00000028039

TTCCAGCGATGAAAAACTTAGCTGACTATTCACCGATCAACAGCAGCTCGACTTGTGGAAACCCTGAAATCAAAGTTTGTCGTTCTTCAATCCAATCAAGCTCGCTTGATGTTTGCACTGAAGAAACATGCAAGTTTGCTTGTTGTCCGACTTGCAGTAGCTCTAAACCAGTTCCTACTGATTTGGGAAACATCAAACCTAGTACAGTTATTAGAATTAAGGATGGTCCATCAAGACCAGGGTCTGCGAAGCCTTCATTTACGTTCGAAAGTGCTTCGGATTCTCACATAGATCCTTTGAATCTCGGTCCTGCCATCGACTACACGAAATCAGGTTTTACGGTCAGTGTTTGGATAAAacagaaagacaaaaataaaggAACTTTAATGTCCAAGACCCTGACAAACAGCCAATACAAAGTCATCTTTCAAGTAGAAATACAGAACTACAAAGTATGGTTTTACTATCAGTATGAACGAGACGGGAATACATCAGTAGCAGAGCTAACTCCAATACAAAGCCaaatgcaaaatttaaaaCCAGATGAATGGCATTTGATTACAGTTACTGTTATAAGTAAAtatctgtcatatttcattgATGGAAAGTTGATCACTGCGGCTCTACTTAAGGGAGCTGTTAAAGATCCTGATGGTCGTGTTCGCATTGGACAGAGATACGGAGGTTCAAGTCAGTATGAAGGATTTTTGCAAGATGTATTTCTATATAATATTACATTAACGAACAGAGAGGTCATTGAGCTATATACCGGCATTCTACCCAAAGAGTATGTAGCCACACAATGTCGCTGTCCTCCAGACTATCCTAAAGTCATGGAAGCATATCGTGCAAAGTGCACTCGCAATATTGACTCACCTGGCCAATCAATGTTACGTCTAGCCGACACAGCACATCCTATTGAACTTGCTACTGATGGGGATACTTCCACATACTGGCAGTCGACACTCACTGACACAGCAGTAATATATCTTGATTTAAAGTATGGTGAACAGCAGGTGTTCTACATAATTTTACAATTCTATGGACCCCAGCCATCAGCATTAAAAATCGAGAGGTCACGTGATAATGGCCGTACCTTTGTTCCATGGCAGTACTTTGCTGCCGACTGTACAAAGTCATTTAACATGACCAACAATGGTGCACTCGCTCAACCAGACTCTGTGAACTGCATACAGTTTGAACTacCACTGTCATTTTCCGGTGCACAAATTTCCTTCAAGACTGAACAGCCTCCCCCACCTAGATCTAATGTGCCTGCGCGACCTTTTGGTTCGCCGTGCTCTAACTTATACTGCTCACCAAAACTCTTAGAGTTCCTCAAAGCAAGTCATGTCAGATTCTCATTTTACAACCACACTTTGGTTAAGAATGCCAAGCACAGATACTTTGCATTGAACAGGATCGTAGTAGCTGGAAGGTGTGAATGTTTTGGTCATGGCAAGACTGCTACATACATTGAGGGTAATGTCAGTCATAGCGGCAAGTGTGTGTGTCAGTGTGAGCCATCAACCTATAGCGAAGGAGACAAATGCGACCGCTGTAAACCATTATACAACAACAAGCCTTTCAAAAGAGGAAACAACACCGACAACTCACCATGCATCAAATGTGAATGCAACCAGCATGCTCCAAGCTGCTACTACAACAGAACTGTAGACCCTAATCCTACTTCCAGAACCCTAGGGGGTGGTGGTGTGTGCATTGATTGTCAGCATAATACCACAGGCCGATACTGCGACACCTGTAAAGAGATGTTCTATCGAGAGAGCGGTAAAAGTAAGAGTGCTGTTGATGTGTGTACACATTGTGCATGTACTGGACCTGGTGTTGTGCCTAACATGTTGGACTGTGTTAAGGATAACACAGCACAAGGAAAACTTGCCGGGCAGTGTGAATGTAAGCAATACACTGAAGGACGACAATGCAGCCAGTGCAAACCAGGCTACTATGACTTAAAAGCCGGTCACGCTACAGGTTGTGTGACATGTGGTTGTAATACTGCTGGTACCATAAATGGTAACAAGACATGTCACACAATCTCTGGTCAATGCCAATGTAAGAGTAACGTCATGGGTATCAAGTGTGACACTTGTAAACCTGGCTTTTATGGCTTGAACACGTTAGAACCATCACGATGTACTGCTTGTAGTTGTGATCCATTTGGCTCTCTAAATAAAACTGTCTGCAATTCTATCAATGGACAGTGTCAGTGTAAGCCTGGGTCAAAGGGACTTCGTTGTGATCAGTGTGACGAAGGCTACCACAGTCTAGATGCAAATGGTTGTAAGACCTGCAACTGTTCCAAGGCAGGAAGTAAACCTTTGCTTATCAACAAATGTGATGCTAAGAATGGTcagtgtttttgtaaaactaaCACCGAAGGCATACAGTGTGATCGATGTAGATCTGGCTTTTTCAACCTTTTGGAATCCAATCCTGATGGTTGTTCAATTTGTGCATGTGATCCAAAAGGAACTATGCGGCCAAAGCAATGCACAGGCAATTGCACATGCAAACGTTATGTCATTGGTAAAAACTGCAATCAGTGTCAAATTGGGACATATAATCTGAGTCTGAGTAATCCAGAGGGATGTCAACATTGCAACTGCGTTGCTAAAGGAACCAAAAATCCCGTCTCAGGAGGTGTTTATGGTTGTAGCTCAAACTTAGGAGAATGTAACTGCCTCAACAATGTTGTCGGTAGACAATGCAATTCTTGTGCAGCAATGTACTACTGGAATCCCTCAGGAAAGGGCTGTGTTGCTTGTAACTGTGATTCAAAGGGATCTCAAGGCAGTGGCTGTAATATGACATCAGGTCAATGCCAGTGTAAAGCAAATATTGGTGGACTTCACTGTGATCGATGTCTACCAGGATACTACGGATTTTGTACTGGAAACTGTCAGCCATGTGGTTGTTATATGGCTGGTAGCAAGTCCAATGCATGTGATGATACAGGGAAGTGTACGTGTAAACAGAACGTGGAGGGTAACAAGTGTGATACATGTAAAACAAATACTGTTAACCTACAGGCCAACAATTCGTATGGATGCAGTGGAGGTATGGacgtcattcattcattcatttattcactcattcattcatttgttcattcattcattcattcattcattcatttaatcaatcaaacaaacaattattcattcattcattcattaatttattcattcattcataaaatcaatcaattaatcaatcaatcattcaatcaatcattcaatcaatcattcgatcaatcaatctatcaatcaaccaattattcattcattcatccattcataaaatcaatcaatcaatcactcgttcattcatttttgtattcacttgttatcattttatttttgtgttcatGACTGTTAATTTCTTGCCGTCGATTTACAAAACGATTCATATATAAAGCGTGCTGCTCTGATTGATTTTAGTGGAAAGTAACTTAAATTTGGCCAAGTAGTATAAAACAACCACGATCAAAAATATGGTTAACATTTTACTTGAagagtaaaataaaatcaaaaatgaaaacgtataaaattcattttattttttattcattcgcaacattttcaaaacaaattgatattCTTCTGAAAACGTACTGTTCGGTCGCAGTTACTCactacaaaaatgaaaaacggTTGTATGCACAACCAATCTGCACGCTACCTGGCTACTAATCAATTATCTATTGATAATTACAGTAACTTGTTTAAATGTTTATGAAGATGATCGGTATTTATCAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75445	Usherin OS=Homo sapiens OX=9606 GN=USH2A PE=1 SV=3
Q2QI47	Usherin OS=Mus musculus OX=10090 GN=Ush2A PE=1 SV=2
Q8K3K1	Usherin OS=Rattus norvegicus OX=10116 GN=Ush2a PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002108 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13385 all species →	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan
PF00055 all species →	Laminin_N	Laminin N-terminal (Domain VI)	Domain	Interproscan
PF00053 all species →	Laminin_EGF	Laminin EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002049 all species →	Domain	Laminin-type EGF domain	Interproscan
IPR048287 all species →	Domain	Thrombospondin-like, N-terminal domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR050440 all species →	Family	Laminin/Netrin Extracellular Matrix	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR008211 all species →	Domain	Laminin, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10574 all species →	NETRIN/LAMININ-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009887 all species →	Biological Process	animal organ morphogenesis	Interproscan
GO:0009888 all species →	Biological Process	tissue development	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0034446 all species →	Biological Process	substrate adhesion-dependent cell spreading	Interproscan
GO:0043256 all species →	Cellular Component	laminin complex	Interproscan
GO:0070831 all species →	Biological Process	basement membrane assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDLIP00000025336.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.