Gene detail

Detailed information of ENSDLIP00000025368.1 in Diadumene lineata

Genomic Location: not available for this species
NR annotation: KXJ16652.1, Protein SOX-15 [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Sequence

CDS

ENSDLIT00000028079

ATGGAGGATTTCCGGGCAATTAGCGATATTCCTTCAAATCCTCGGCCTGTACCAATGGTCTCACCAGTGTCTTTTGACAGTAATTTggattcaaactatttctcTCCGATACCAAATCAACTTCAAACATCACCTGATGTATTCTGGCCATACAACAGCGATCACCGACACTCACCATATCCTAATGGATATCCATGCAATAATGTTGGTCAATATGCTTACTGGAGAAACTCACCCTACCCCACTGTGGACCAAATGTTAATGCCTAGAGAATGGGCTAATCCATCACCAGACAACTGCAATTTCCAAGTTCCACCATGGTCAATGGAATCTGTACCCATGGTACAAAATATGAACATGCACACTATGAATCATGGGATACCATCTTGGCCTACAAGTAGTGCTAGAGCTAGTCTTGATTTCTCAAATAGTGGGGATTCATCATTAAGTGAAATTGTGATGTCAGTATGTGGTGATCTTAACCACAAAGATGATCAAGGTTGTAATGTGGACCATGAGATGAAAGGCATAAATAGCAACAGCACTAATGGACAAACTGGTTTCAGTCAAACATGGTGCCAGACGTCCACACCAATGTCAGAGTTTCAACCAGTTGGAAAGAAGTACGATTCATGTCAGTGGCAACAAGCTGACAGTACCAGCACTATTAATGGTATATCTACTCAGACTGACTTCAAAATTAAAGACAAGAATAAAGGcataaagagagaaaaaccTTCAGAAAACAAGCCTCAATCCAAGTCTAAAAtcaagaaagagaaaaagacaACAGTAAATGAtgtcaagaagaaaagaaCTTCAAGGTCTTCCTCAAGGAAACCAGAAGCTTATAAGAGACAAAAGAGACTccaaagagaaagagaaagtaAAATCAGAGATGCCATCCAAGAACTGAACACTATACTGCCCAATGATGAGGAACACAAGAAATTAAGTAAAAACATGATCCTATTGAAAGCCATAGAACATATTTCTCTATTGAAGATCAAACTAGGCGAGTCTCTTGTAAGCCAGGTCGAGATGGAGATGTCTGAGGAAGAATTCTCACCAGAAGCCAATCCTaagaagaagaggaaaatCAAGAgcagaaaagaacaaaagaatagAAAGACTCCACAAGTGATAACGctCCCAAAAGAGCAACCAGCTTCGAAAACCAATCCAGTATTATCTATAACGACCAACAATGGCAGTCCGTCATCGACTACCTCATCTGAACACGAATACTTCATGAATGACTTATTAACACCATCAGAGTCATCTATTGGTAGTGATAGTTTGGAGAGTTCTTGTACTGATAATGGCTATCATGACTGTACTAGTCACATCAAAAGACCAATGAATGCATTCATGCTGTTTAGTAAAGCAAACAGAGAGAAATTCAAGAAACTTTACCCAGGTCGTGATAACAGACGCATCAGTACAATACTTGGAGAGCACTGGAAAGGGAtgaatgaagaagaaaaactaCCCTTCCAAGAAATGGCCAGAGAACTAATGCGTAGGACAAAGGAGACTTTTCCAGAGTTCAAATATTCACCCAATGACAACCATCCAAAAACTTCTAATGAGGAGCACAGCAGGGAGAATAGCCCCAAAAAGGACTTCAAAATTGGAAATCATCAACTTCGTCACAGAGAAAAAGGCAAAGATGCAAAGTCTGGTTCAGAACATATATGTGCAGAAAACAATATTCTGAATGGAACAAGAGATAGCACCATCAACACTGACAACAAAGACACTAAACCAGTAGAGTGCAGTACCAAACTCTGTCACATACAGCCTGATAACAGTCATGTTGGTTGTGGCTACCTTGTACAGTGTGATAAATGTCTGAAGTGGAGAAGATTGTCTGATAGTGTCAACCCTGCAACATTGCCTGATAAATGGTTTTGCTGGCTAAGTACTGATCCATCAGTGTACGACTGCTCAACACAGGAAGACAGCATACAGGTCAAAGTACAAAACGTTTAG

Transcript

ENSDLIT00000028079

CCAGCAAAGTTAGTTGACGGTTGCGAAATCTGAAGTTTGGTGTTCTAGTAAACTGCGATGGAGGATTTCCGGGCAATTAGCGATATTCCTTCAAATCCTCGGCCTGTACCAATGGTCTCACCAGTGTCTTTTGACAGTAATTTggattcaaactatttctcTCCGATACCAAATCAACTTCAAACATCACCTGATGTATTCTGGCCATACAACAGCGATCACCGACACTCACCATATCCTAATGGATATCCATGCAATAATGTTGGTCAATATGCTTACTGGAGAAACTCACCCTACCCCACTGTGGACCAAATGTTAATGCCTAGAGAATGGGCTAATCCATCACCAGACAACTGCAATTTCCAAGTTCCACCATGGTCAATGGAATCTGTACCCATGGTACAAAATATGAACATGCACACTATGAATCATGGGATACCATCTTGGCCTACAAGTAGTGCTAGAGCTAGTCTTGATTTCTCAAATAGTGGGGATTCATCATTAAGTGAAATTGTGATGTCAGTATGTGGTGATCTTAACCACAAAGATGATCAAGGTTGTAATGTGGACCATGAGATGAAAGGCATAAATAGCAACAGCACTAATGGACAAACTGGTTTCAGTCAAACATGGTGCCAGACGTCCACACCAATGTCAGAGTTTCAACCAGTTGGAAAGAAGTACGATTCATGTCAGTGGCAACAAGCTGACAGTACCAGCACTATTAATGGTATATCTACTCAGACTGACTTCAAAATTAAAGACAAGAATAAAGGcataaagagagaaaaaccTTCAGAAAACAAGCCTCAATCCAAGTCTAAAAtcaagaaagagaaaaagacaACAGTAAATGAtgtcaagaagaaaagaaCTTCAAGGTCTTCCTCAAGGAAACCAGAAGCTTATAAGAGACAAAAGAGACTccaaagagaaagagaaagtaAAATCAGAGATGCCATCCAAGAACTGAACACTATACTGCCCAATGATGAGGAACACAAGAAATTAAGTAAAAACATGATCCTATTGAAAGCCATAGAACATATTTCTCTATTGAAGATCAAACTAGGCGAGTCTCTTGTAAGCCAGGTCGAGATGGAGATGTCTGAGGAAGAATTCTCACCAGAAGCCAATCCTaagaagaagaggaaaatCAAGAgcagaaaagaacaaaagaatagAAAGACTCCACAAGTGATAACGctCCCAAAAGAGCAACCAGCTTCGAAAACCAATCCAGTATTATCTATAACGACCAACAATGGCAGTCCGTCATCGACTACCTCATCTGAACACGAATACTTCATGAATGACTTATTAACACCATCAGAGTCATCTATTGGTAGTGATAGTTTGGAGAGTTCTTGTACTGATAATGGCTATCATGACTGTACTAGTCACATCAAAAGACCAATGAATGCATTCATGCTGTTTAGTAAAGCAAACAGAGAGAAATTCAAGAAACTTTACCCAGGTCGTGATAACAGACGCATCAGTACAATACTTGGAGAGCACTGGAAAGGGAtgaatgaagaagaaaaactaCCCTTCCAAGAAATGGCCAGAGAACTAATGCGTAGGACAAAGGAGACTTTTCCAGAGTTCAAATATTCACCCAATGACAACCATCCAAAAACTTCTAATGAGGAGCACAGCAGGGAGAATAGCCCCAAAAAGGACTTCAAAATTGGAAATCATCAACTTCGTCACAGAGAAAAAGGCAAAGATGCAAAGTCTGGTTCAGAACATATATGTGCAGAAAACAATATTCTGAATGGAACAAGAGATAGCACCATCAACACTGACAACAAAGACACTAAACCAGTAGAGTGCAGTACCAAACTCTGTCACATACAGCCTGATAACAGTCATGTTGGTTGTGGCTACCTTGTACAGTGTGATAAATGTCTGAAGTGGAGAAGATTGTCTGATAGTGTCAACCCTGCAACATTGCCTGATAAATGGTTTTGCTGGCTAAGTACTGATCCATCAGTGTACGACTGCTCAACACAGGAAGACAGCATACAGGTCAAAGTACAAAACGTTTAGTGGCAGCATTATATAGTATGGTCAATCAATGGCATGGATACGTATAACATAACAActgaacaaaataatatattgtaATCGAACAAGTGTTTTGAGCATActtattttaaaatctttgaATACCGTAATACCAAGTCTCATGAGATGATTTCAAGCATTGAATTGCATTAATTTTTATAGCTGAAAAGTGATTTATACGTGCAATTTGATTTGAGATTTTATGATTCGAATATGAAATGTATTTTTACCTAGTAATATTGACATGCATAATGACTTTATCAGTGATGTtataacaatgtttgcaaataaaagtaattttcaaaatgtacaGTCTGGGAATTATTgaacaattattttcaaaataataaccAGTTCATAATAAAGTCAATCAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q04891	Transcription factor SOX-13 OS=Mus musculus OX=10090 GN=Sox13 PE=1 SV=4
Q9UN79	Transcription factor SOX-13 OS=Homo sapiens OX=9606 GN=SOX13 PE=1 SV=3
Q28EW4	Transcription factor Sox-13 OS=Xenopus tropicalis OX=8364 GN=sox13 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008832 (this species only)
Transcription factor family	bHLH · all TF in this species
Transcription factor family	HMG · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07496 all species →	zf-CW	CW-type Zinc Finger	Domain	Interproscan
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF00505 all species →	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011124 all species →	Domain	Zinc finger, CW-type	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR051356 all species →	Family	SOX/SOX-like transcription factors	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR009071 all species →	Domain	High mobility group box domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45789 all species →	FI18025P1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDLIP00000025368.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.