Gene detail

Detailed information of ENSDLIP00000026049.1 in Diadumene lineata

Genomic Location: chr7:16370574...16377608
NR annotation: XP_020892430.1, F-box/LRR-repeat protein 6 isoform X1 [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSDLIT00000028838

CTTgaaaaaatggcggacgtcGCGGACGACGTTACGTAGAAACacatttatgataataataaattatgtcAACCAAGGAAAAAACAACTGGAAAAGGACTTTTTGGTGTTCGCAAGTCAGCTTGCAGTCAATTCCGTCCATTTGGTCGTCACGCTGAAGCCTATCCATCAGATGACAGCGATGATTCGGATTATGAACCGAGCACTGAGGGTCCAGACCACGATGATTCATCGCCAATAAAGCACGTGAAACAAGCTACTATTCCTTCTGTAGTAGCTAGTAAAGGTGACGGAGGAAgtgttaaaaatatcaaacgaCCTAAATCTGCTGTAGACGGCTTGAAAATAGGTTTCAAAACAGCTGGCACAGTCGATAAAGCGTGTTCTACGAAAGCATGGTCTGATATTCTTCCAAGTGAAATTCTCCTGTCGATATTTGTTTACTGTGTTCAAAGTCAAGGACCTATTCCACTATTGAGTAGGTTATCCAGAGTATGTCGTCGATGGAATACAATGGCTAAAGAACCTAGTCTGTACAAGAAAATGAATCTTAGCAGTATTGGCAAATATGTTCTAGCTAGTGATAGCTTAATTAAACAGCTGATATCCAGGGGACTATCAGGTGTTGAGGAATTAAGTCTTGATGGGTGGATCAAGCTTACTGATAAGGGGCTCCAGTTTATCACAAAGAAATGCAAGAACCTCAGATCCTTGTCTTTGTCAAACTGTGAGGGTCTTTCTCCTAAGTTTTTGAATATTCTGGCAGAGGAGCAGTGTGCAAGTCTTACAAGCATAGACATATCTGGAAATAAGATTGATCATGGCTCTTTGAGGAACATGCTTACTAAATATGGAAAAAACATGAAAGAATTATTGATGAGAAATTGTAAAGGCTTCCCAGGCTCTACTCTTCTTCCAATGATACAGgAATTCTGCTCAAATCTCCTTCATCTTGATCTTTCTGGCACTCTTGTAAGacaaatcaaaattgaaattctTCAGGAAAGCTGTCCAAAGCTGAAGAGTCTTTTACTTGCTAATTTATGGCCCCAGCCTTCATATGTTTATTCTAGAAATTCAAAAGCAAGTGGTGCCAATGGTTTCCCTGATCTAGAGCATCTTTCATTGGCTTGTGATACTCAAGCTGGAATAGCTATAAATGATGCATTGATTACAAGGTTATTAAAGACATCCACCTACCTACGAGTGCTGGATATCAGAGGTTGTGGTAGAATATCAGTGGAAGCAATTCAGAATCTCAGTTCAGCATGTCTAGAATCACTGTATCTAGGCAACACTGATGCTTCTGATGCCATGGTAACAGCAGTATTAGATAAGTGGTCATACAGTCTGCAACATCTTGATCTCAGTAATAATCCAGTTCGGGACGACACACTAGCTTTATTACAACGGTATTCTCTACAAAATTTAAGAAGCCTCAATCTGATGAGTACAGGAACTACAATTACAGGGGTGGGgtatGTTCTTAAATACTGCCCGAGACTTGAAGACTTGAATCTTTCATCTTGCCGTGGATTGCCACGTGGTCTGAAACAGCGGTATACTGGACAGTGGCTCATCAAACTAACCACCCAGGTTCTTTCTGGGTCATTGGGTGAAAGTGATGGTCAATGACATTGTATGATACAGCACATGATATATTATCCTTGATGATGCAGCATGCACTATGGTCTCACATAGCCCAGCATGCATTGTTGTCTTACATAGTCCGACATGCACTGTGGCTGTGTATGGTACAGCATGCATTGTGATATTATATGGTCCAGCATGTATTGTGGTTGAATATGGTCCAGCATGCATTCTGATCTTGTGTGGTCCAGCATGCATTGTGGTTGAATATGGTCCAGCATGCATCGTGATCTTGTATGGTCCAGCATGAACGAGGTCATATCTATGGTCAATCATACACTTGTGTTTTATACAGCCCAGAATGCAACGAGAACCCTAACATACACTTTAACTCTTTTACCACAATTTTGGAACAGAATCTACCAGAGTCAAtaatgacaatgtttttttctatattcTGTTGGTGTGCTGTAAACTCTGGTGATCCGGAAACCTGGGACGAGCAGACGTTCCTACAAGTAATAAGGATTACCATACGAAACGACAATTAATTTAGCATTTCAGTTATGTGTTTTAACCCGATGTCTTTATTGTTTCATAGAAGCACCATAcataaagagaaaaaacacTGAACCAAATAGTTGTACTATAAAAAAACGCGTACAAGAACCCGTGTTTTCAAAATAGCCTAAACAGTTCTTAATATATAAATGGTAAATTTAGGATACCATGTGAATATCATTTTACAGCTACTCTATTGATATGAGCCTTCTTAAACTTTAGTCTTAATAGGTTCTTAGTCAGAGAGTGATTAACTGATGTAAATTCTAGGCTGCTCAGGTTCTTATACGTGGGTTTTTACCGTATTAAACAATGCTGGAATCCTATGTACAGTGTATGATACAtgtctaaaatatttttgatttgcttttgatgaagaatattttttacaatataagTTAAAGTGAATATAAGTGGATATCTATATATTGGCGTGGCGCACATAGTTAATTTAACTATGGCGGTCCGCGATTCCAGAAACTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N531	F-box/LRR-repeat protein 6 OS=Homo sapiens OX=9606 GN=FBXL6 PE=1 SV=2
Q9QXW0	F-box/LRR-repeat protein 6 OS=Mus musculus OX=10090 GN=Fbxl6 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002865 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 adaptor Cullin RING\|F-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF00560 all species →	LRR_1	Leucine Rich Repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR047922 all species →	Domain	F-box/LRR-repeat protein 6, F-box domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR006553 all species →	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13318 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146 all species →	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDLIP00000026049.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.