Gene detail

Detailed information of ENSDLIP00000026467.1 in Diadumene lineata

Genomic Location: not available for this species
NR annotation: XP_020894941.1, nuclear RNA export factor 1 [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Sequence

CDS

ENSDLIT00000029334

ATGGCTGGTCTATTTGGCAAAGCAATGAAGGATGCAACTTTCTCGGTAACAACGACAGGAGATGGAAAAAGGACCGTTGATCGAGATAGCGGTGATTCCTCCTATGACAACAGAAGGGGGAATTACAGAGGTAGGGGTAACAGAGGAGGAAGAAATCGTGGTAGGGGACCAAGAGGTCACTGGAGAGGCGGAGGAAGGGGTAGAGGAGGATACCAAGGAGAAAGGAGAGGTGGTTCACAAGGTGCTGGTCCAAGGTCATAcctggatgatgatgatgaaagtatggaagatgataatggtggCGGCAAGTCTATCAGCTCAAGATATACCCCATATGGTTCTAGACCTCCAAGTAGACGTGGATTTAGAAGCGATGATAATCAAGGTAGACCTGGGGGCAATGACGTCAGATCAAGGCTTGGAAACAATCCCCTACACAGTAGCGACTCGAATTGGTATAAAGTTACAGTTGTGAAAGGGAAGTTGCAAGACAAAGATTGGCTCATCAAAAGAATACAGAATAGTTGTGAAGAGGCTTTCCAGCCTGTAGATTTCCATTACATGGGAGAAAGTGCTTTGTTCTTTGTGGAGGGCAAAGATGCAGCTGAGGCACTGAAGAAAACTAGTCATAAAATAACAGTGAGAAATGGATCAAAGATCATCATCAGCGTTCGTCCTAGTGACCCACCCAGAACTAGAGCACTTGGAGGTTCAGGGAGCTCAGCTTCTAATGTAAATCCAGAAACTGAACAAGTTTTAAAGGATTGTTTGAGCACTCGCTATGATGCTGGAACTAAGGCAATGAATTTATCTGATCTTTATAACGATGAAGttttaaaatccAACAATGTCCAAGGTCACATATATAAGCCTTACATCGCTGGAGGAATCTTAAAACTTATTGGAGAGAACTGTCAAGATATGGAGGGGTTAGATTTGAGTGACAATCGTTTGTATAACTTGGATTCAATAAAAGACATAGCAAAATATGCTCCAAAGATTAAACATCTCAAGATGTCTAATAATCAGttcaaaaatattgatgaACTTGATAAAATCAAGGGACTGGCAGAGGTCATCAGTCTAGATATCACCAACAACCCATTATGTGACAAGTTTGAATCACCGACAGCATACATCAATGCTGTAAGACTCAGATTTCCCAAAGTCATTACTCTGGATGGAACAACACATGCACCACCAATAGGATTTGACTTGGCGGCTACTACAGCCTTACCTAAAGTACAGGGGAGTTATCTTGGAGAGCCAGCAATCAAAGAGATTATTCTCAATTTTCTTCAGGAATATTTCAAAGTGTTTGATTCTGGTGATCGCCAACCATTACTAGAAGCCTATCATGAACAGGCAATATTTTCTCTGTGCACGAACACCGGAGACAAGGGACAAAACTTTGGCAAAGGACAAAGGGGACCATCACTTGGAGAATACATGAAACTCAGTAGAAACATGCTAAGACGAAAAGAACCAGACCAAAGAGCTTCTCTTATCAAGCATAATAGGCTATTAGTTGTAGCCATGTTGAGTGAACTGCCTCCAACAACACACGATTTGTCAACCTTTATTATTGATGTCAACTTTGCACTGCCTTCATGCCTTTCCTTTTCTATACGAGGATTATTCATGGAAGcAAACAAAACGTTACGCTCATTTACAAGAGTTTTCATAGCAGTACCAGCTGGTGGAGGACAATCGCTTAGAATAGTTAATGATGAGCTCCATATAAGAAGTCCAACATTATCACAGATACAGGCTTTTCATAAACAACGTTCTATAAACGAAGCAAAATCAACAGCACCAACAGCAACACCTTCAATAATAGCAACACCATCAACTAGCTTACAACCAACTATTCCTAATTTGACCCCAGAGcaACAACAAATGGTCACTCAATTTAGCCAGGAGTCCAAAATGAAAGCTGATTGGTCCTACAAgtgTTTGGATCAGAATGGTTGGGACTACGCCAAAGCAGCTAAAGTTTTTACAGATTTAAACaGTAAAGGAAGTATACCACCGGACGCTTTCGCGACGACGTAA

Transcript

ENSDLIT00000029334

ATTTCTTCTAAATTGAAATTGTGTTTTCAAGTAGTACATTTATATTGttgattttaacattatttatgGTATTTCGTCGCTTTTCAAATGGCTGGTCTATTTGGCAAAGCAATGAAGGATGCAACTTTCTCGGTAACAACGACAGGAGATGGAAAAAGGACCGTTGATCGAGATAGCGGTGATTCCTCCTATGACAACAGAAGGGGGAATTACAGAGGTAGGGGTAACAGAGGAGGAAGAAATCGTGGTAGGGGACCAAGAGGTCACTGGAGAGGCGGAGGAAGGGGTAGAGGAGGATACCAAGGAGAAAGGAGAGGTGGTTCACAAGGTGCTGGTCCAAGGTCATAcctggatgatgatgatgaaagtatggaagatgataatggtggCGGCAAGTCTATCAGCTCAAGATATACCCCATATGGTTCTAGACCTCCAAGTAGACGTGGATTTAGAAGCGATGATAATCAAGGTAGACCTGGGGGCAATGACGTCAGATCAAGGCTTGGAAACAATCCCCTACACAGTAGCGACTCGAATTGGTATAAAGTTACAGTTGTGAAAGGGAAGTTGCAAGACAAAGATTGGCTCATCAAAAGAATACAGAATAGTTGTGAAGAGGCTTTCCAGCCTGTAGATTTCCATTACATGGGAGAAAGTGCTTTGTTCTTTGTGGAGGGCAAAGATGCAGCTGAGGCACTGAAGAAAACTAGTCATAAAATAACAGTGAGAAATGGATCAAAGATCATCATCAGCGTTCGTCCTAGTGACCCACCCAGAACTAGAGCACTTGGAGGTTCAGGGAGCTCAGCTTCTAATGTAAATCCAGAAACTGAACAAGTTTTAAAGGATTGTTTGAGCACTCGCTATGATGCTGGAACTAAGGCAATGAATTTATCTGATCTTTATAACGATGAAGttttaaaatccAACAATGTCCAAGGTCACATATATAAGCCTTACATCGCTGGAGGAATCTTAAAACTTATTGGAGAGAACTGTCAAGATATGGAGGGGTTAGATTTGAGTGACAATCGTTTGTATAACTTGGATTCAATAAAAGACATAGCAAAATATGCTCCAAAGATTAAACATCTCAAGATGTCTAATAATCAGttcaaaaatattgatgaACTTGATAAAATCAAGGGACTGGCAGAGGTCATCAGTCTAGATATCACCAACAACCCATTATGTGACAAGTTTGAATCACCGACAGCATACATCAATGCTGTAAGACTCAGATTTCCCAAAGTCATTACTCTGGATGGAACAACACATGCACCACCAATAGGATTTGACTTGGCGGCTACTACAGCCTTACCTAAAGTACAGGGGAGTTATCTTGGAGAGCCAGCAATCAAAGAGATTATTCTCAATTTTCTTCAGGAATATTTCAAAGTGTTTGATTCTGGTGATCGCCAACCATTACTAGAAGCCTATCATGAACAGGCAATATTTTCTCTGTGCACGAACACCGGAGACAAGGGACAAAACTTTGGCAAAGGACAAAGGGGACCATCACTTGGAGAATACATGAAACTCAGTAGAAACATGCTAAGACGAAAAGAACCAGACCAAAGAGCTTCTCTTATCAAGCATAATAGGCTATTAGTTGTAGCCATGTTGAGTGAACTGCCTCCAACAACACACGATTTGTCAACCTTTATTATTGATGTCAACTTTGCACTGCCTTCATGCCTTTCCTTTTCTATACGAGGATTATTCATGGAAGcAAACAAAACGTTACGCTCATTTACAAGAGTTTTCATAGCAGTACCAGCTGGTGGAGGACAATCGCTTAGAATAGTTAATGATGAGCTCCATATAAGAAGTCCAACATTATCACAGATACAGGCTTTTCATAAACAACGTTCTATAAACGAAGCAAAATCAACAGCACCAACAGCAACACCTTCAATAATAGCAACACCATCAACTAGCTTACAACCAACTATTCCTAATTTGACCCCAGAGcaACAACAAATGGTCACTCAATTTAGCCAGGAGTCCAAAATGAAAGCTGATTGGTCCTACAAgtgTTTGGATCAGAATGGTTGGGACTACGCCAAAGCAGCTAAAGTTTTTACAGATTTAAACaGTAAAGGAAGTATACCACCGGACGCTTTCGCGACGACGTAACAAAGGCTGCGTTAATCATACGTAAAATAGATAGAACTATTTACCATCGGCGTCTACGGAACCGTTGAACACATTCCGTGTTGAATCATAACTATAAGTGCACAAAGTAAATTATCAAAAGCTGTAAATGTTATCGCAAAAAGTTCTTAGAACATCGTTTACCGTATGGCTATTTAAAAACTAACGTAACGTAATTACGTGGAAGAGATGTTACGTAAAATTACTGCGAAATTACAAACGCATGATATCTGCTATGTGCAGTAAGCTGATGGCTAATGACTACGCGAGGAGTAACTACGATAATTTGAATTTGTAGCAGcttgttgaaaaaaaacaaaaaaactaaaaacaaaacaacaacaacaaaaaaaaaaacgacaaaaacGTAACGTAGTTGTACCATCATACATCTACAAAAGGAGTGCATTACGTAACGCAATACGACCGTATGTGGAAAATTTATATTATGAGCTTTGAATGTTTTCCACAAAgaatatattttactttttgctGTGATGAAAGACAAATTTTTAGCAAGTGAATGTTATCATAATATAATGGCTATGACACCATTATTGACAAGAACATTGATATATACGTATTTTAGAAGTATTCATACATTAATAAAGGTTTTTGTAAATGTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UBU9	Nuclear RNA export factor 1 OS=Homo sapiens OX=9606 GN=NXF1 PE=1 SV=1
P58797	Nuclear RNA export factor 1 OS=Coturnix japonica OX=93934 GN=NXF1 PE=1 SV=1
Q5R752	Nuclear RNA export factor 1 OS=Pongo abelii OX=9601 GN=NXF1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003680 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09162 all species →	Tap-RNA_bind	Tap, RNA-binding	Domain	Interproscan
PF03943 all species →	TAP_C	TAP C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005637 all species →	Domain	TAP C-terminal (TAP-C) domain	Interproscan
IPR015245 all species →	Domain	Nuclear RNA export factor Tap, RNA-binding domain	Interproscan
IPR032710 all species →	Homologous_superfamily	NTF2-like domain superfamily	Interproscan
IPR030217 all species →	Family	Nuclear RNA export factor	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR018222 all species →	Domain	Nuclear transport factor 2, eukaryote	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10662 all species →	NUCLEAR RNA EXPORT FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0051028 all species →	Biological Process	mRNA transport	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006406 all species →	Biological Process	mRNA export from nucleus	Interproscan
GO:0016973 all species →	Biological Process	poly(A)+ mRNA export from nucleus	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14284	NXF, TAP, MEX67; nuclear RNA export factor	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.