Gene detail

Detailed information of ENSDLIP00000026478.1 in Diadumene lineata

Genomic Location: not available for this species
NR annotation: XP_020909269.1, putative tRNA pseudouridine synthase Pus10 [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Sequence

CDS

Transcript

ENSDLIT00000029345

AtgttaacaaaaacaaaatggcggatgaaAGAAGCATGTTTTAATAAAATCCTGTTTTTCCATAGTTTTTACGAAGTTCATGGCCGTTTTAAAGTATTTTGCGAATATTTACAACAGTGTCTAGCTTAAGGAATTGAGTAATTGCAAATTTAAGTTTTTTTCACTGTTCTTAAGCAGAACATGGAGTCCGAAAGTATCAAGACCATTGCAAGGGAACTGCATGATTTGGGATTGTGTCAACGTTGTGTTTTACGATTCATAGATGAGAGAGAGGCTTCACTGTATGAAGGAGACGATGAGaaagtttcAAGCTATATCTACAAGAGATTTGGTATAAATGAAGACAAAagtgatgaaaacaaaaatggagaAAAGAATTGTGAATCCCCAGCAGAAGAAAGAGACAGTTCATGTACAGCATGTCTTGGAATACTGAAATCGTACAAGTCTACTGTCAAACAGATTGCAGATGCTATAGAGAATTCCCAGTTTGAATACAAAAGTTTTACTCTGTCTTTATCTCTTCCACTCTGCTGCCTTGTAAGACAACACTCACTGTTTTTACatctcaaagaaaaatatagTGATATTTATTCAGATAAAAAGACTGTAGACTCCTTACCAACTATAAAAGAGATATTCAAGTGGGTTTGTGGACCAGCCTTGGGTGAGATACTTGGTGTCTACTTTGAACATGAAggCCCATTCCAGGTGGCTGTTCATTTTGCACATAACAATGGAAATAAGGAGTTAGAATTTTTGGAAGACTTTGATCCTGCACAattcaaagaaagaaaagtaaagaaaAGAGCACCTCCACCAGTAATATTTTCTCAAACAACTGTGAAGAATGCACTGGAAGAATTTAGCTCAGCAGATAAACTTAGAAAATATACATTTTGTCCTCCAAAGACCCCATCTTACAAATGCAGCTGTAGCCAAGTGACGTGTACTCATTCTGGAATATTATTAGCAGGCAGATATAACAAGTATTCAAGACGACTACCTCAAACACCATGGATGATAGAAGGTGAAAGGATGTTAGAGTCATCTGTACAGGAAAAAATCTGTGATGTTCTACAAACCAAGATTAAAGCAGATGaCTACAAATTTTCCTCTGGTGGAAGAGAAGATGTGGATGTTTGCATGTTAGGGACAGgTCGACCATTTGTGATTGAGTGTGTTAATCCTCGTAAAACAAACCTAAGTAAAGAGTTCTTATCGTCCTTACAACAAGAAATTAATTCCTCCACATCTGATGTAGCAATAAGAGATTTACAAGTTGTAACAAAAGAAGATTATGCAAAACTAAAAGAAACAGAGAATACCAAAACCAAAACATACAGCTGTCTGGTTTGGACTGAACAAACGATCACCAAAGAACAACTATTACCATTACATGATGTTAAGGACTTGGTATTGCAACAGAAAACACCACTGAGAGTTTTACACAGGAGACCAGTTGCTGTCCGCGAAAAAGGTGTTCATTACATGAGTACTGAGTGGATAGATGACCATCACTTTAGGCTGGTACTAAAAACAATGGCTGGAACCTATGTGAAAGAGTTTGTTCATGGTGATTTTGGCCGTACTAAACCTAATCTAGGAACACTGTTGGGAATGCAGACAGATATATTACAGCTTGATGTCAAGTCTGTAGATGTTGATTGGCCACCATGTCTGGAGTGATAGACTCAAATGCCTGGATCACAAAGCCTGGTTTGGCACCACCTGATAAATTTCTTACATTTATTATTCTATGCAGTGATTCactgaaaaattgtcaaacaGATATATCCcagagcttagccaatcagaacatattattcaaagaaatgttatctgattggctgagcatTGGTATAACATCTGTGTCACACAGAccttttcaaaagtacagggCATCAGTTGTACAGAGCCTTAATTACGCTATCCaacagataaatccctatccaacagataaatccttatccaacggataaatccctatccaacagataaatccctatccaacagataaatccctatccaacAGATAAATCCTTATCCAACAGATAAATCGACCCTATCCaacagataaatccctatccaacagataaatccctatccaacagataaatccctatccaacagataaatccctatccaacagataaatccctatccaacAGATAAATCCTTATCCAACAGATAAATCGaccctatccaccagataaatccctatccaccagataaatccctattcaacagataaatccctatccaacagataaatccctatccaacagataaatccctatccaacagataaatccctatccaacagataaatccctatccacctgataaatccctatccaccagataaatccctatctaATGGATTAATTCTTAAGATATTCTATACTGGGGACAACTTTACTAACCGCCACAGATTTAAATGATCAAATACAGATTTAAATCATTGGTATGGTATTTATATGGTTCCAGGCATTGTGCAGGTAGACGTTAGCAAGTattttaaaagataccaaataaTTTTCTAATTGTAATCACCATATCAATTTATTTggtaataaacaaaattttatCAACATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3MIT2	tRNA pseudouridine synthase Pus10 OS=Homo sapiens OX=9606 GN=PUS10 PE=1 SV=1
Q9D3U0	tRNA pseudouridine synthase Pus10 OS=Mus musculus OX=10090 GN=Pus10 PE=1 SV=1
Q6ING2	tRNA pseudouridine synthase Pus10 OS=Xenopus laevis OX=8355 GN=pus10 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003642 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21238 all species →	Pus10_C	Pus10, C-terminal	Domain	Interproscan
PF21237 all species →	Pus10_N_euk	Eukaryotic Pus10, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039894 all species →	Family	tRNA pseudouridine synthase Pus10-like	Interproscan
IPR048741 all species →	Domain	Pus10-like, C-terminal	Interproscan
IPR048742 all species →	Domain	Pus10, N-terminal, eukaryotes	Interproscan
IPR020103 all species →	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21568 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009982 all species →	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0031119 all species →	Biological Process	tRNA pseudouridine synthesis	Interproscan
GO:0001522 all species →	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0009451 all species →	Biological Process	RNA modification	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07583	PUS10; tRNA pseudouridine synthase 10	EC:5.4.99.25	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.