Genomic Location: chr6:18323107...18326814
NR annotation: XP_020899616.1, neutral and basic amino acid transport protein rBAT [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families
| CDS |
| ENSDLIT00000030514 |
| Transcript |
| ENSDLIT00000030514 |
| Protein |
| ENSDLIP00000027516.1 |
| UniProt accession | Description |
|---|---|
| Q91WV7 | Amino acid transporter heavy chain SLC3A1 OS=Mus musculus OX=10090 GN=Slc3a1 PE=1 SV=1 |
| P43473 | Alpha-glucosidase OS=Pediococcus pentosaceus OX=1255 GN=agl PE=3 SV=1 |
| Q64319 | Amino acid transporter heavy chain SLC3A1 OS=Rattus norvegicus OX=10116 GN=Slc3a1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003162 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00128 all species → | Alpha-amylase | Alpha amylase, catalytic domain | Domain | Interproscan |
| PF16028 all species → | SLC3A2_N | Solute carrier family 3 member 2 N-terminus | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006047 all species → | Domain | Glycosyl hydrolase, family 13, catalytic domain | Interproscan |
| IPR031984 all species → | Domain | Solute carrier family 3 member 2, N-terminal domain | Interproscan |
| IPR017853 all species → | Homologous_superfamily | Glycoside hydrolase superfamily | Interproscan |
| IPR013780 all species → | Homologous_superfamily | Glycosyl hydrolase, all-beta | Interproscan |
| IPR042280 all species → | Family | Amino acid transporter heavy chain SLC3A2 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46673 all species → | 4F2 CELL-SURFACE ANTIGEN HEAVY CHAIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005975 all species → | Biological Process | carbohydrate metabolic process | Interproscan |
| GO:0006865 all species → | Biological Process | amino acid transport | Interproscan |
| GO:0015173 all species → | Molecular Function | aromatic amino acid transmembrane transporter activity | Interproscan |
| GO:0015180 all species → | Molecular Function | L-alanine transmembrane transporter activity | Interproscan |
| GO:0015190 all species → | Molecular Function | L-leucine transmembrane transporter activity | Interproscan |
| GO:0015823 all species → | Biological Process | phenylalanine transport | Interproscan |
| GO:0016323 all species → | Cellular Component | basolateral plasma membrane | Interproscan |
| GO:0016324 all species → | Cellular Component | apical plasma membrane | Interproscan |
| GO:1903801 all species → | Biological Process | L-leucine import across plasma membrane | Interproscan |
| GO:1904273 all species → | Biological Process | L-alanine import across plasma membrane | Interproscan |
ENSDLIP00000027516.1.Genes whose expression across the transcriptome samples of Diadumene lineata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Diadumene lineata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
