Gene detail

Detailed information of ENSDLIP00000028690.1 in Diadumene lineata

Genomic Location: not available for this species
NR annotation: XP_020907061.1, HMG box-containing protein 1 isoform X4 [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Sequence

CDS

Transcript

ENSDLIT00000031700

TTCTACACAGAGAGCAAAGTTGACCGATTTTAAAGCGTGACGTTTTGCCACCTCAAAAATCGTGCAGAAGGATTGGAATTAGTTGTGCTGCACGGTGTTAACAATCGCTGGTTGGTCAGATAATCGTGCGAGCTATTTGAAGGGCGCAGTAAGCCGACCAAAGGAACAATCCCGCCAGCTCTGGATTTAGGGATCTTGGGGGAGTTTGCATTCTACGCTACTGGGCCGCAAAGTCCTCTCATGCGGGAGGTATATGGGTGTGCCAGTGAGACAGAGAGTCCAGTAGATCCAAGAGATATTGACTACAATATCCCTAGCGTTGAAAGTGACGCAAGCGCAACTTCACCCGACACTACCAACACTATGGCATACCGACAAGCCACCCCACCCCCCACAGCATGGAGTTGTTTCTTGAATGGCACAAGGATCCAGTTAGAAGGAGAAAATGAGTGGAAATACGCAGAGGATCTTGGGAGTGATGATATTCCTAATATCTGTGATCCCAGTGATGGTTTGAGGTTGACGGGATGTGAGCGGATCGTACATGTGGTGGATCACCTTGACGATACAGAGTTTCTAGTATCATTCTCCTCAACGTCTGACAATCTGCCCAGTCTAAGAGCAGAAGTCGCTGGCGACCATCCATTCTTTGTCAAGAACAAAGGTTGGACCTCTATTCAACCAAAGAGGACACTAGAGCATTATGGGATGGTTTGCCAGCCTTTATCACGTGGTGATATCTGTCTCCCGTCATCACATCCCACAGTACTTAAAGCTGCACGATTGGCAAGGACTGGCACTAACATGTTTGACTTCACGGATTTAGACGCTTCTGATGCAGCGTTAACTTTGAGCTGCATGGCAAAGGATCGACAAGAGCACCGATCTCGAAAGTCAAAGCTTGCGTCGCTTGTCCCGGAATCGACCTCAGAAATCCACATGAACAAGCGTCCAATGAATGCTTTTATGTTATTTGCTAAACAGTATCGCTTAAAGATAACCAAAGCACACCCTGGAAAAGACAACAGAGCTATAAGCGTAATTCTTGGCGATAAGTGGAAGTCAATGAATGCAGAAGAAAGAAGCGAATACGTACTGGAGGCGAAGAGACTTGCTGAAGAACACAAGAGGGTTAACCCGGACTGCTGGAAGCGAAAACGAACAGGAGGACAGGGCCGAGCTAAAGTCTCAAAAAGATGAcctaacaagaaagaaaagaagagaaaaaacgtTATGTGTTGTATTAGTATAGGTAATTGGATGGTTTAGAGTTGGAATTATTTAGCACTTGCTAGTTGTTTCTTCTGAAAGGATCCGTAGTGGACTTTTCTTACCCAGATTTGGTCGTATtacaaatttataaaatatctaTTCTTTGTAAGCCGTTCCGAAAGAAATATATGAGAgcaaataatttcaaataaaaatgaccatctttttacattttaataatatacttgaaAAATTTCGCGAGTTTTCCGTATTTTTCGAtaaaaatttatcaatttatacTGAAGTTCCGCAATATTCTACATCCGTTACAGATTTCTGTATTGTTATCTACTTTGTACTGCTCACGACCAAACAAAATCAAGATTTTTTCAAGTATATTACTAATAGAATTACAGTTAATATATTCAAGTGACTTTACTGTTAGTTTAACTACATTGAATTGTGTTTCCCATGGAAACAGGTGTTTGCCTTATTGATCATATCATGCTCAATAATGTTGTACATTTTCTACCGGCAGCCCAAGCTGtcaatattgataaaaaacatGCATTCAATGGCAGCatgtaataattttataaatagttaCAGACAATGAGCTTGGACTGCCTGTTTATTGTTAAAAGCTAGGAAGCTTTGGAGGCGATGGAGACCGTTGTTTTGGACTTTTGGTTTTTGCTTATAGCGAAGAGAAGAGCATGGAGGTGGGAAAGTCTGTATTTCATCCTCTTGCCTCTCCTCCTCTTCCCCTCACTTACTCAACAAATCATAATcgtttttagattttttagGCGGTCATAATTCCTACAGGTAGCCCAGCCAAAACAACTTTTCCCTGCTCGacaaagaaaaacgaaatcaTTGATACGTACGTTGATTTATACATTAATTTGATTCATACATTTTGTAAATCTTTCAGGTAGCGACAGTTTTTAAGGACGTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2KJ34	HMG box-containing protein 1 OS=Bos taurus OX=9913 GN=HBP1 PE=2 SV=1
O60381	HMG box-containing protein 1 OS=Homo sapiens OX=9606 GN=HBP1 PE=1 SV=2
Q62661	HMG box-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Hbp1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002458 (this species only)
Transcription factor family	HMG · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505 all species →	HMG_box	HMG (high mobility group) box	Domain	Interproscan
PF08517 all species →	AXH	Ataxin-1 and HBP1 module (AXH)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009071 all species →	Domain	High mobility group box domain	Interproscan
IPR036096 all species →	Homologous_superfamily	Ataxin, AXH domain superfamily	Interproscan
IPR003652 all species →	Domain	Ataxin, AXH domain	Interproscan
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR039655 all species →	Family	HMG box-containing protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15499 all species →	HMG BOX-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDLIP00000028690.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.