Gene detail

Detailed information of ENSDLIP00000030135.1 in Diadumene lineata

Genomic Location: not available for this species
NR annotation: XP_031563918.1, DNA-directed RNA polymerase III subunit RPC1-like [Actinia tenebrosa]
Species Diadumene lineata · all data for this species · gene families

Sequence

CDS

Transcript

ENSDLIT00000033338

TGCAAATGCAAGAGTGTGCCCGTTCTTTTTAAGTAAGTGTTGACTGACATACTGCTTCCAGTCAATCGATGTATACAGTGCAAATGCAAGAGTGTGCCCATTCTTTTTAAGTAAGTGTTGACTGAGACACTGCTTCCAGTCAATCGATGTATACAGTGCAAATGCTAGAGTGTGCCCGTTCTTTTTAAGCTGTTATTCTAAAGGAACTGTCAGTCATCAGAGATCACGCTGGAAAAGCTTGTCTTCGGGAACTGCACAAGACAAACACCCCTCTCAATATGGCACTATGTGGCTCAAAAGGTTCGTTTATCAATATCTCTCAGATGATTGCTTGTGTTGGACAGCAAGCCATATCGGGAAAAAGAATACCAGATGGGTTTGAAGATCGATCACTACCTCACTTTAAAAGACATTCTAAGATACCAGCAGCTAAGGGGTTTGTCAAGAACAGTTTCTTCTCTGGTCTCACTCCTACTGAGTTCTTCTTTCATACAATGGGTGGACGTGAAGgTCTTGTAGATACAGCTGTCAAGACAGCAGAGACAGGATACATGCAAAGAAGACTGGTTAAGTCTCTGGAAGACCTATGTTGTCAGTACGACCATACCGTTCGTAATTCAGTGGGCGACATCGTGCAATTCAGATACGGTGGAGATGGCCTGGACCCGACTGATATGGAGGGAAAGGACAAACCGTTGGACTTCTCACGTGTATACAGCCATGTGcagTGCAACCATGTAATGCGAAACGAGAGCCCGATGCCTCCACAAATGATTCGCCAACGTGTCAATAAAATAGTAGACGGTGAAATATTCAAAGATTGTAGCAACGACTTTAAAGCAGAAGTCAAGTCGTATATGGATGGTATGATCAAGAAAATAGATCAATCACAGCAGAGATATGGTCTTGAGTTTGACGTTGACGACGATGAAGACAGTAATCAAGGCTCTCATCCTAAAGTTCTGAACTATGTCAATCGACTGACAGAGAGCCAACTACGTATCTTTCTTACAATGTGTCGTGATAAGTACCTTAAAGCACGCATGGAGCCTGGAACTGCCGTCGGTGCTATATGTGCACAGTCCATCGGTGAACCAGGCACGCAGATGACACTGAAAACATTCCATTTTGCAGGAGTCGCTTCTATGAACATCACCCTCGGTGTGCCAAGAATCAAAGAGATTATCAATGCGTCGCGTCGCATTAGCACACCTATCATATCAGCACAGTTGATGAATGACACCGATGCTGAACTCGCTAGAGCCGTCAAAGGCAGGATTGAAAGAACTCTGCTAGGAGAGGTAACTGAGTACATTGAAGAGGTATACACCCCAGACAGCTGCTATGTACTTATCCAACTAGCACTGAGTAGAATCAAACTATTAAAGCTTGAGGTGGACGTTGATTCTATCCGGATGGCTGTTTGTACAATGAAAAAAGTCAAGATAACTCATTCGCAAGTACAAGTCCACAGTGAGGCAGTGTTGAGTATTCATCCTCAAGAGACAAGCAAGAGTTCTCTACATTACGTCATGCAGTTGCTGCGGTCTGAACTACCTAACGTACTGATTAAGGGTCACAAGAACGTTAATCGAGCTATCATCCACATCGATGATGAGAAGGCTGACGGACACGAACATTACAAGCTTCTGGTAGAAGGGGATGACTTACAGGCCGTTATAGCCACCATGGGTGTAAAAGGAACAGCCTGCTCATCCAATAACACCATAGAAGTAGAACGAGTTCTGGGCATCGAAGCAGCAAGACAAACAATCATGAATGAGATCATCTACACCATGAAGAACCATGGCATGAGTATTGATGTGCGTCACGTGATGCTGTTAGCTGAACTTATGGCTTTTAAGGGCGAGATTCTTGGCATCACTCGTTTTGGTCTCAGTAAAATGAAGGAAAGCGTTCTTATGTTAGCATCGTTTGAGAAGACCGCTGACCATTTGTTTGAAGCCGCACTAAATGGAAGAACGGATTCGATTGATGGTGTCAGTGAGTGCATAATTATGGGAATGCCCATGTCTGTAGGAACTGGAATTTTCAAACTTCTTCACAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZL98	DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus OX=9031 GN=POLR3A PE=2 SV=1
O14802	DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens OX=9606 GN=POLR3A PE=1 SV=2
A4IF62	DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus OX=9913 GN=POLR3A PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003075 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05000 all species →	RNA_pol_Rpb1_4	RNA polymerase Rpb1, domain 4	Domain	Interproscan
PF04998 all species →	RNA_pol_Rpb1_5	RNA polymerase Rpb1, domain 5	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007083 all species →	Domain	RNA polymerase Rpb1, domain 4	Interproscan
IPR038120 all species →	Homologous_superfamily	RNA polymerase Rpb1, funnel domain superfamily	Interproscan
IPR045867 all species →	Family	DNA-directed RNA polymerase, subunit beta-prime	Interproscan
IPR035698 all species →	Domain	DNA-directed RNA polymerase III subunit RPC1, C-terminal	Interproscan
IPR007081 all species →	Domain	RNA polymerase Rpb1, domain 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19376 all species →	DNA-DIRECTED RNA POLYMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0001056 all species →	Molecular Function	RNA polymerase III activity	Interproscan
GO:0005666 all species →	Cellular Component	RNA polymerase III complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDLIP00000030135.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.