Gene detail

Detailed information of ENSDLIP00000030571.1 in Diadumene lineata

Genomic Location: chr8:13656074...13671271
NR annotation: XP_020900471.2, tenascin-R [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSDLIT00000033818

GTTCTCGAAACTTTCAAAAACTTTTGCCATGGGAAAAAGGTAACTCTTGATGGCACAGTTTACTCAGGGTTTAAAGGTGTGGCTTTTCGACGTATATCGTCACATTTGATATCAAGTAAGATTGTCCCCAATCTTTCTGTCTGTGCGTTTGACTGTGTTAAACAATGGGAATGTCTCTCCTTCAATTTTGCAAATCCTTCAGGCGGAGGGCATGTTTGTGAACTTCTGAGAACAGATAAGTACAACAGTAACTCTACCTATACTCAAAATGGCGATTTTCATCACTTCTATTCGTCCCCGAACCAATGCGAGTCCTCTCCGTGCAAATATGACGGGTCCTGTTACCCTGACTACCAGAATGACGTCTACAAGTGTATGTGTACTTCATACGCTTTAGGCGTGAACTGTGAGAACTATGTTTCCCCTTGCTCATCAAGTCCATGTAAAAACGGCAGTACGTGTAGTACACCAACACTGGCGACATTTAAGTGCACTTGTGCTGCCGGCATGACTGGAACGTTCTGTGACACAGAGCTGCCACCAACTCCATGTTCGTCTAATCCATGCCAGAACGGTGCCACGTGTAGTGAACCAAGTTTATCAACGTATTCATGTGCCTGTTCTTCCGGGTTTATGGGAGTAAACTGCGAATCAGCGACGCCATGCTCGTCTACTCCCTGTCAGAATGGCGGTACCTGTAGTGAACCGACTCCAACAACATATTCGTGTACTTGCGGGACAGGGTTTATGGGACAAAACTGCCAAACACCAACGCCGTGTTCGACTAGTCCATGTCAGAATGGCGGTACTTGCAGTGAACCGACTCCGACAACATATTCGTGTACTTGTGGGACAGGCTTTATGGGACAAAACTGCCAAACACCGACGCCGTGCTCATCTAGTCCGTGTCAGAATGGAGCCACTTGCACGGAGCCAACCCCGACAAGCTTTTCATGTACTTGCGCACTTGGGTTTTCTGGAGGACAATGTGAAACCGCAATCCCATTACCATGCGAAAGCAAGCCATGTTTAAATGGAGGTACATGTTCTGATCTCACGTCGACCACTTACAACTGTTCGTGTGTACTTGGATATTATGGAAATGTTTGCCAGAACATATTTCGCGACTGTGCTAAGTACAAAACGACTCAACCCAGTTTGCCCGACGGGATATACACCATCCAACCGGACACGAGTGCGCCTGCATTTAACGTTTCATGCGACATGACTTTCGAGGGAGGCGGATGGATCGTCATTCAACGACGACAATTCGGCGACGTCAGCTTCGATCTTAAGTGGAACGACTACAAAGTGGGATTTGGGAAACTAGACCGAGACTTCTGGTTGGGAAATGATCGTCTTCATCAGATAACGAAGAGTTTTTACAACACGCTTAGAATCGATGTTAAAGATTTCGCGGGAAATGCTGCTCATGCGCAGTATACGGTGGTAAACGTTGGTGATGAGGCTAGTAAATACACGCTTACTTTAAAAGGTCATTATACTGGGACAGATGGGAACGCTATGAACGCGCATAACCTCATGAAGTTTACCACTGACGATAGCGATAACGATGCGAACACGGGCTCAAACTGTGCCACAATTCACAAGGGTGGGTTTTGGTACAAGAATTGTATTGAAGGCGGTGCTAGTCCGAATGGAGTGTTTAGAAGTTCACCGAGTTCACTGGGAGATGGCATTATATGGAAAGCATGGAAGAATAGTCTAGAGAATGTGAAGTTTGTGCAAATGATGATAAGACCACCGAACTatgattgCAAGCTAAAGACAACAGATGACTTGAAATGCTGTCATAttccattcttttattcagGCAATGTGTACTATAAATGTACAGACATTGGAACTCTTTGGCCAAAGTACTTCTGGTGCTCGTATCAGTATTCCTATTTCACTAGCAACAGTTATTGGGGGAAATGCTAGTTTTAACAAGTAACAATGGCGCATCTAGGGGTAGTGCGACAGGGTTCGTTACACCCgtttttcacagttttttttacataatttgGATTCAAACGAACAGCACTCATATGAAATAGTTAAAGCAAAGAAGTAGAAAATCTTGAAcctgttttgaaaaatccttaATCCGCCACTGCAAAAACCATGGGATATCTCGTGCACTGATTGATCGACTGAGATTTTTGGCCCTTTCAACACATTttcattgttcatttatttttccaaaaaggTTTACCAGTTGTAAATAATAcagataaatatatacattactTTATATTTGTCGTGTAAAAAAGACATAATGTTTCTTTCCCGTTCTTGAGAAAGATTTATACTCTTTTATTGGGCTATACCAGGGGCGCAGCGTGGTCATTTTTTCAGGtacgcacaagtacatatgatctacAAAAACTTATTATGTAAACTGATCAAAAATACTCCGTTCTTGTCTGcgtgcttagattcaattttacaatttcatcaaagtgtttttttcatcacaaaagtcttggttgcgtacaaataaaattttaaaaatagaaacaattgataaacttttcaaaatgttcGGAAAATTCAAGTACGCACATGCGTATTTGCGTATAGAACGCTGCGACCCTGTATACACATTGCATGACAGCAGTTGACAAAGTGAGTCATATTCACAAAATTAGTATTAAAGTCTTACAAAGTATATTTTAAGTTTCAAGTTGGCTTGCTTCAGTTTCTTCGTAACGAGGCCAGTTATCAGGGTCAATGGTAACACAAATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D8VNS7	Ryncolin-1 OS=Cerberus rynchops OX=46267 PE=1 SV=1
D8VNS8	Ryncolin-2 OS=Cerberus rynchops OX=46267 PE=1 SV=1
D8VNS9	Ryncolin-3 OS=Cerberus rynchops OX=46267 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000012 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF00147 all species →	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan
IPR002181 all species →	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR013806 all species →	Homologous_superfamily	Kringle-like fold	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR000562 all species →	Domain	Fibronectin type II domain	Interproscan
IPR051355 all species →	Family	Notch and Slit guidance protein	Interproscan
IPR014716 all species →	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45836 all species →	SLIT HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDLIP00000030571.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.