Gene detail

Detailed information of ENSDLIP00000030927.1 in Diadumene lineata

Genomic Location: chr9:8476688...8494361
NR annotation: KXJ20213.1, Dicer-like protein 1 [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSDLIT00000034184

ATGTATTCGCGCGAACGCCCTGGAACTTTTGAACACGTTTGGAGCGGTGCTTGCAACGTTCCTTTGGGAAACCAAGaGACCATGGCCACGGAGAGTCTCTGTCAAAATTGTTCCTGGATTCCACACCAGAACTGTCAACATCAAAGTCTTAACGTTCCATTAAAAGAAGTCAGATTGTCTAGAAATGGTTACAATAGCTCTTTTCCGCATTCCAACGAACCGCTGACAAAGGAATTAAACAACAACTCGGAAATAGAATTACTTGCAATGAAAACTCTCGTGGAAAAAGACTTGTGTTCTATCGATGATGTACAGAAAAAGACCAACGCTGTTGTACCACCAAGAGTTGTCGAGGAAGTCATGGAGAGTCTCTCAATGAATGGCTATGCAAAGCGTATTAGAAAAACTCCTGCAGTTTGGGCAAAAGCTGGCAAACTGGCAGACTGTAGTACATATTACGGTAGCCCTGGAGGTCGCGGAACTTTCGTCCATTGTGGGATGGCAGGGAGAAATGGTTCTAGTCCTGTAACTTTTCATGAACCAGATCACTCGTTTCAGATGGAAGAAAGCTTCATGAATACAACAAGCTTCAACCGATCCATATCATCGCCATCTTTTCATAAGAGTTACTCAACGTTTCCAAAGCCTCCAAGAAGAAAGATCTCGGAGCCAGCCCGTAATGAAGTGCCGAAATACTTTGCACGACAGCGGTGTCGATCAACTGCAAGCGAAGACGACCTAGATTGTAGACGATATGGCAGGTTTATTGGGAACCCCAACCCGAAAGAGCATTTGCGCTTTGAAGACAACGGTTCTCCGCCAACTATAGCTGAATCGGCTGCACCTGGTTTTGGCGTGCTTAAAATTGAGCTCCCTTCTGCTGACTGCTCGAAGGGCATTCGGCAAGTGAAAGAGAAATTCACTAGACAAAGGCGCAGCCCTGGAGTAATAGGAGAGGAAAGATCGAAGATGAACTATAGAAGCAGAAGTTTCGAAGAGTCATGTAACTCGCCTAATCATCTCCGTGTTAATGCTAGGCATGCCGATAACATTCGACAAAGATCCAAAAGCTTTGGGTCGGATGGAGACGTGAAGTCGTGTGGTTTGTGTAAGATCCCCTTCCTTACCAAACAGCAATACGAAGAACATTTACAAAGCACTAAGCACCGAAATAAAATAGCCAAAGTGAACTCAGAACCGTACTCGAAATTCTGCAACTACTGTAACGTTGGGTTAAACTCAAAGTCTCAAGCTATTGAGCATTTCTCAAGTGGAAGACACGAACAAACCGTTGCAAAGTCACAGAAAGCACCAACTCGAATTCATCCTTCGCTAGTCACTAACTCTGAGGGTTCTGGTGATATGTGTCTCACCATGACAAAACCTCAAGATTATCAATTGGAGCTGTACGCAAAAGCCATGACTACAAACTCTGTGTGCTTTTTGCCAACCGGAACTGGCAAGAATTTAGTGTCTGCTATGGTTGTAGCGCAATTGCTTCTGCGCAACCCTACTCGTCAAATAATCTTTCTTGTAGATCGAGTTCTTCTCGTGCTCCAACAAAGCGACTATCTCAAACGAGAACTGCAAGACTTACAGATTCCACAAACAGCCAAGGATACTATGCACTCCAATGAAGCGACATTTCTCCTTCAGTATGGCCAGCAAGCCTTAAGATCAGTTCGCATCGGAGCTATTTGTGGAGAAATGAGGAAACTCGAACAAGGAGTCCCTATATTTAACCATGACATCCTAGTAATTACTGCTGACTGCTACAGGAATCATATTAATAACGGGACACTTCGATTTGAGGACAGCGGGTTGATAGTCTTGGATGAATCACATCATTGTAATAAGGATCACCCTTACCATGTTATAATTCGTGACTATTATCGTCCTGATGAAGCCACCGTGTTCGACAGGCCAAAGATTCTTGGAATTACATCATCTCCTGCAGGTGAACTTGCACTTGATCGAACCCATAAAAAGATTCAACGACTGCTCATGAACCTTGGAGGTGCTTCCTTATTGACTGTCTCTGACCACGCTGAAGACCTTGCCAAAAAAACAAGGCATGTCGAAATTGTTTGTCTTCACTCAGAGTACACACATTCGGAGAAAAGTCTTCTTGGAATTCTCATGGAATACGCCACCAAGTGTTTTAACCTTGCAGCTCGTGTAAGTGAATTTAAAGAGTACAAAGATGTGTTCCAGCCATCGTCTGGGGGAACTTTGTCTAAAGAAGACGTCGTCCCAATCCTAGAAGTCATCGATAAGTTTTCCATGTTCTCCAAACCTCACACCATCGCTGTTAATTCCTTGCTGCACTTCAAGGCCATTTGTGACGCTATTAGTGCGCTGCAGGAATGCGATGAGAATATAGCAATTCAGCGTATGACAGAGCTTATGAAGAGGGAGTGTTCCCATGGATTCCACTGGGCTATGCAGCAAGACTTACCTTGTGAGAATCTCATGGCGTACATCAAGCAGTTTACACAGGtttgcTGTCCTATCGAGTTCATGGATTCCAGCATTCAGAAGCTGATCGCTTTACTCGCTcaagatataaactttaatGACACAGTCAGACCTCTTGCTCTAGTTTTGGTAAAAAGATGGCAAACTGCTTTTCGACTTGCCAAGTACCTTGATTCATCTCCTTTGAGAAATAGAGGAATAAGGACAGCGAGTGTGGTTGAGATTGATGCCCAGAGTTGTCTATTTGggaacccaataCTTGACAGTACCACATTAGCCGACATCAAAGAAGGTCACTACCATATTGTCATAGCAACTGATCCGTCGAAAAGTTGCCTGGATTTTCCGTCAGTCCAACTAGTCGTACAACTGGACCCTCCTAGTGCGGTTAGTGCCTTGGCTAGTGTTCGTGCTTTCGGTGGTGGACTGGCAAGGGCTTCCTATGTCATGATCGCGCGGGATGGAAGTCTGGAAAGTAAAGTAAAACATCTCCtattaaaagagaaaaatatggttCATGCAGCAGAGATCATCAATAGCGGCAAGACTGTTTGTATGTATTAA

Transcript

ENSDLIT00000034184

GAAGTTTTGCAGTACATTTTCTCACAGGAAACCCGACTATCAAAAAAACGAGTTCATTTGTCTTCATCTTGTATTTTCGATTTCTGGGAACTGAAGCGAAATTAGAAACTTATTGAACCACGTGAAAATGTACGAAGTTAAGAAACCTCTCACAGAGTGTATGTTCCTTTTCAAAGTGAAATCACTTTTGAAGTTGGTTACTCTGTTATTTGTCAACTCTGGTGATGTATTCGCGCGAACGCCCTGGAACTTTTGAACACGTTTGGAGCGGTGCTTGCAACGTTCCTTTGGGAAACCAAGaGACCATGGCCACGGAGAGTCTCTGTCAAAATTGTTCCTGGATTCCACACCAGAACTGTCAACATCAAAGTCTTAACGTTCCATTAAAAGAAGTCAGATTGTCTAGAAATGGTTACAATAGCTCTTTTCCGCATTCCAACGAACCGCTGACAAAGGAATTAAACAACAACTCGGAAATAGAATTACTTGCAATGAAAACTCTCGTGGAAAAAGACTTGTGTTCTATCGATGATGTACAGAAAAAGACCAACGCTGTTGTACCACCAAGAGTTGTCGAGGAAGTCATGGAGAGTCTCTCAATGAATGGCTATGCAAAGCGTATTAGAAAAACTCCTGCAGTTTGGGCAAAAGCTGGCAAACTGGCAGACTGTAGTACATATTACGGTAGCCCTGGAGGTCGCGGAACTTTCGTCCATTGTGGGATGGCAGGGAGAAATGGTTCTAGTCCTGTAACTTTTCATGAACCAGATCACTCGTTTCAGATGGAAGAAAGCTTCATGAATACAACAAGCTTCAACCGATCCATATCATCGCCATCTTTTCATAAGAGTTACTCAACGTTTCCAAAGCCTCCAAGAAGAAAGATCTCGGAGCCAGCCCGTAATGAAGTGCCGAAATACTTTGCACGACAGCGGTGTCGATCAACTGCAAGCGAAGACGACCTAGATTGTAGACGATATGGCAGGTTTATTGGGAACCCCAACCCGAAAGAGCATTTGCGCTTTGAAGACAACGGTTCTCCGCCAACTATAGCTGAATCGGCTGCACCTGGTTTTGGCGTGCTTAAAATTGAGCTCCCTTCTGCTGACTGCTCGAAGGGCATTCGGCAAGTGAAAGAGAAATTCACTAGACAAAGGCGCAGCCCTGGAGTAATAGGAGAGGAAAGATCGAAGATGAACTATAGAAGCAGAAGTTTCGAAGAGTCATGTAACTCGCCTAATCATCTCCGTGTTAATGCTAGGCATGCCGATAACATTCGACAAAGATCCAAAAGCTTTGGGTCGGATGGAGACGTGAAGTCGTGTGGTTTGTGTAAGATCCCCTTCCTTACCAAACAGCAATACGAAGAACATTTACAAAGCACTAAGCACCGAAATAAAATAGCCAAAGTGAACTCAGAACCGTACTCGAAATTCTGCAACTACTGTAACGTTGGGTTAAACTCAAAGTCTCAAGCTATTGAGCATTTCTCAAGTGGAAGACACGAACAAACCGTTGCAAAGTCACAGAAAGCACCAACTCGAATTCATCCTTCGCTAGTCACTAACTCTGAGGGTTCTGGTGATATGTGTCTCACCATGACAAAACCTCAAGATTATCAATTGGAGCTGTACGCAAAAGCCATGACTACAAACTCTGTGTGCTTTTTGCCAACCGGAACTGGCAAGAATTTAGTGTCTGCTATGGTTGTAGCGCAATTGCTTCTGCGCAACCCTACTCGTCAAATAATCTTTCTTGTAGATCGAGTTCTTCTCGTGCTCCAACAAAGCGACTATCTCAAACGAGAACTGCAAGACTTACAGATTCCACAAACAGCCAAGGATACTATGCACTCCAATGAAGCGACATTTCTCCTTCAGTATGGCCAGCAAGCCTTAAGATCAGTTCGCATCGGAGCTATTTGTGGAGAAATGAGGAAACTCGAACAAGGAGTCCCTATATTTAACCATGACATCCTAGTAATTACTGCTGACTGCTACAGGAATCATATTAATAACGGGACACTTCGATTTGAGGACAGCGGGTTGATAGTCTTGGATGAATCACATCATTGTAATAAGGATCACCCTTACCATGTTATAATTCGTGACTATTATCGTCCTGATGAAGCCACCGTGTTCGACAGGCCAAAGATTCTTGGAATTACATCATCTCCTGCAGGTGAACTTGCACTTGATCGAACCCATAAAAAGATTCAACGACTGCTCATGAACCTTGGAGGTGCTTCCTTATTGACTGTCTCTGACCACGCTGAAGACCTTGCCAAAAAAACAAGGCATGTCGAAATTGTTTGTCTTCACTCAGAGTACACACATTCGGAGAAAAGTCTTCTTGGAATTCTCATGGAATACGCCACCAAGTGTTTTAACCTTGCAGCTCGTGTAAGTGAATTTAAAGAGTACAAAGATGTGTTCCAGCCATCGTCTGGGGGAACTTTGTCTAAAGAAGACGTCGTCCCAATCCTAGAAGTCATCGATAAGTTTTCCATGTTCTCCAAACCTCACACCATCGCTGTTAATTCCTTGCTGCACTTCAAGGCCATTTGTGACGCTATTAGTGCGCTGCAGGAATGCGATGAGAATATAGCAATTCAGCGTATGACAGAGCTTATGAAGAGGGAGTGTTCCCATGGATTCCACTGGGCTATGCAGCAAGACTTACCTTGTGAGAATCTCATGGCGTACATCAAGCAGTTTACACAGGtttgcTGTCCTATCGAGTTCATGGATTCCAGCATTCAGAAGCTGATCGCTTTACTCGCTcaagatataaactttaatGACACAGTCAGACCTCTTGCTCTAGTTTTGGTAAAAAGATGGCAAACTGCTTTTCGACTTGCCAAGTACCTTGATTCATCTCCTTTGAGAAATAGAGGAATAAGGACAGCGAGTGTGGTTGAGATTGATGCCCAGAGTTGTCTATTTGggaacccaataCTTGACAGTACCACATTAGCCGACATCAAAGAAGGTCACTACCATATTGTCATAGCAACTGATCCGTCGAAAAGTTGCCTGGATTTTCCGTCAGTCCAACTAGTCGTACAACTGGACCCTCCTAGTGCGGTTAGTGCCTTGGCTAGTGTTCGTGCTTTCGGTGGTGGACTGGCAAGGGCTTCCTATGTCATGATCGCGCGGGATGGAAGTCTGGAAAGTAAAGTAAAACATCTCCtattaaaagagaaaaatatggttCATGCAGCAGAGATCATCAATAGCGGCAAGACTGTTTGTATGTATTAACAACATTAGCTTTCATGATGCGCGCAAGAACACTGCTATAAAGGAATAATTGCCATCACGCTCTCTGTTgtcaattgccctatttcattatgacgtcacatcaaaatagatctattgtttaaacgctaagaatcatggtcgccaGAGAGGATACAGCAAGTctatataaattattgaaaaataagctAAAATACCGGTTATAagatgtaaacaagccatgacgtcatagtgaaataggatAATTGAAAATCTATTGTTCAAGCACAAAAAATCATGGTCGTCGGGAGGGAGTCAGGTTATCGGAAATTCTaagaaaattatt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2U6C4	Dicer-like protein 1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dcl1 PE=3 SV=2
A1DE13	Dicer-like protein 1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dcl1 PE=3 SV=1
Q4WVE3	Dicer-like protein 1 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=dcl1 PE=3 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005340 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12874 all species →	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan
PF04851 all species →	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003604 all species →	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR006935 all species →	Domain	Helicase/UvrB, N-terminal	Interproscan
IPR051363 all species →	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074 all species →	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDLIP00000030927.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Diadumene lineata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Diadumene lineata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →