Gene detail

Detailed information of ENSDTNP00000001745.1 in Metridium senile

Genomic Location: :...
NR annotation: XP_020914813.1, probable ATP-dependent RNA helicase DDX43 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSDTNT00000001745

ATGGAAGATTGGGACTCCCAAGAAAGCGGCGACGTTCGCCAAAAAtcgcagcaacaacaacaaccctGGCTCCCGCAAAGTGACGAGTACTCTCGACAGCCGGCTTTTGGTCGAGGTAGGGCGAGAAACAGAGATGAAGAAACCTTTGGCAGTCGTGCTAGGTCTGACGGTCCACCTCGAGGTGGTGGAGGATGGTCGAGGAGAGGTCGTGATGATCGTGGAGATGATTCAAACTGGAGAAGTCGCGAACCACGTGGAGGAGGTTTCACGTCAAACAGACGAACTGAAATGGTCAATGTCAACTGTGATAGTGTAGGGCGAATTATAGGGAGAGGTGGTTCAACTATAAAAGGTATCATAGAGAAAAGTGGAGCACACGTTAAGATAAGAAGAGAGGACGCTACATACTTTGATCAGCCAATTGAAATTACTGGCGCAGATGATGCTATTGAAAAGGCAAAGGACTTGATAGATGAAATAGTAAACCCTTATTCCCACAAACTTAATAAGGAGCCAGGTTGTGCTCCTATGGTATCATTTGCTACCATCCATGCTCTAAGAGAGGAAAATGCAAGAACTAAGTGGCTAGGTTTACCCACTATTAACAAGATATTCTATAATGAAATGGATTCAGTCAAATACAGAGACCCTGATGAAGTTGAACAGATTAGGCTTGAGAAAAATAACATAATGGTTGGGAATTATGGTGAAAATGTTCAAGAACGTCTCATTCCAAATCCTGTGTTAACCTTTGAAGAAGCTTTTCAAGATTACCGTGAGTATTATAGTTGTCAAGCCTGGCCTGTTCTCATGTCTGGAATGGATCTCATTGGTATAGCCCAGACTGGAACTGGGAAAACGTTAGCTTTTTTGCTGCCTGCATTTCTTCACATTGATGGACAAGATGTACCTCGTAATGAAAGGGGAGGCCCATCCGTTTTAGTGCTATCCCCTACTCGTGAGCTGGCATTACAGATAGAAGAAGAAGTTAAAAAATACCATTACAAAGGAATCAGAAGTGTGTGTGTTTATGGTGGTGGTAGCAGAAGGAACCAGATTAATGTGGTTGAACAAGGAGTTGAAATTGTCATAGCCACACCTGGCAGACTCAATGATCTTCTTATGAATGACTTATTATCAGTGAGAAGTGTGACGTATTTGGTTCTTGATGAAGCTGACCGTATGTTAGATATGGGTTTTGAACCAGAAATCAAGAAAATTCTACTTGATATTAGACCTGATAGGCAAACTGTCATGACAAGTGCAACATGGCCGCCTGGTGTACAACGTATGGCTGACCAATATATGACAGATCCGGTTAGAGTGTTTGTAGGAAGTCTAGATCTCAATGCTTGTGAGAATGTTACTCAGTTGGTTGAAGAAATCGATCAAGATGAGAAAAGACAAAGGAGTTATGAGTTTATCGAAAGCCTGGGGCCTGACGACAAAGTGTTAATTTTTGTTGGCAAGAAAGTTATGGCAGATGACCTGGCTAGTGATTTTATGCTCAAAGGTATCACTGGTGTACAATGTATCCATGGTGATAGAGAACAATGTGACAGAGAACAAGCCCTGGATGACTTTAAACGAGGACTTGCACATGTCTTGATTGCTACTGATGTTGCGTCACGTGGTCTAGATATCAAGGATGTCACGTTTGTGTTGAATTATGACTTCCCACGTGGTATTGAAGACTACGTACATCGTGTTGGACGGACTGGTCGTGCTGGCCGTTCTGGAACAGCTGTAACATTCGTAACAAGAAATGACTGGAGTTACGCCCACAAACTTATCAACATTATGACTAAAGCAAATCAGGTCGTCCCTGATTTTCTTCATGACATGGCAAAGAGATACGAAGAATATAGAGAAAGAAATAGTGAAGGAGGGGAACGACCAAGAGGTGATGGCTGTTTTAAGTGTGGTCAGTCAGGACACTTTGCAAGAGAGTGTCCCAATCCTTCAGATGGTAACACAGACGGTAGAAGAGGAGGAGGTCGAGGAGGGGGTCGAGGAAGGGGTCGAGGAGGAGGCAGAGGACGAGGGCGGAGTAGCTTTGTTGATGGTTTCGAGGGGGTCACAAGAGATTATAGTGGTCGTCGTGGCAGAAACGATAATCTTGGAAGCTGGGCATGA

Transcript

ENSDTNT00000001745

Protein

Uniprot

Uniprot term	Description
Q9NXZ2	Probable ATP-dependent RNA helicase DDX43 OS=Homo sapiens OX=9606 GN=DDX43 PE=1 SV=2
Q86TM3	Probable ATP-dependent RNA helicase DDX53 OS=Homo sapiens OX=9606 GN=DDX53 PE=1 SV=3
A6ZRX0	ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=DBP2 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013	KH_1	KH domain	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR004088	Domain	K Homology domain, type 1	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004087	Domain	K Homology domain	Interproscan
IPR036612	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17043	DDX43; ATP-dependent RNA helicase DDX43	EC:5.6.2.7	Spliceosome	ko03041	deepkoala