Gene detail

Detailed information of ENSDTNP00000002297.1 in Metridium senile

Genomic Location: not available for this species
NR annotation: XP_020895013.1, ferredoxin-fold anticodon-binding domain-containing protein 1 homolog [Exaiptasia diaphana]
Species Metridium senile · all data for this species · gene families

Sequence

CDS

ENSDTNT00000002297

ATGGCTCTCATTAATCCTAAGTTTTACACAGGACCTGCGTTAATCGTTGGAGATGGTAATTTCTCATTCTCTGCCTGCTTAACGCAGTCTTTAGGTGAAATGAGAACTGAAGTTTTTGCAACTTCGCTTGATACACAAGAACAAGTTGAAACCAACCTTTTTGCAAAAGAAAACCTCGACAAAATATCTGCATTTTCATCTTTTAACGTCATTCACGGCGTCGACGCTACAAATTTAGAAGCAACTTTCAAGGATAAGATATTTCATAAAATCATCTTCAACTTTCCACATACTGGCGGGAAACTTAAAATCAGCAAGTGTAGAGATTTACTTGAAAAGTTTTTTATGTCAGCATCAAGACATATTGAGCCCACCAGAGGGGTAGTATGTGTCAGTCTTTGTCAAGGTCAAGGGGGTACTCCACAGGATTCTATCCAAAGGGATTATGGGAATACTTGGCAAGTTGTCCAGCAAGCAGCAAAAGCAGGTCTTATTCTAAATGATGTCCATCCATTCAGAGAGGCTGACTATCCAGGCTATTCTAGTGCTGGGTTCAAAGGCAGAATTAATCAAAGATTTACAGCAGATAAAGGATTGACATACATGTTTATACATGGTAGTCCATTACAACCAACACCTGACCTACAATCTTTTCTAAAGATGAGAAAGACTGCTTCAAATTCTTGCAAAAGCTTATTTCTCATTGACAACCATCCTGTGAGTAAAGCTAGGAGAAAAATTGAAACGTTTTGTAAAACTGAAAACAGGGATAAATTTGACATCAGAAATGATCATGAAGAAGGGAACGAAGTAGAATATGTTACAAGTCTTGAAGACAAACTAGCAAGCACATTGAAATTATCAAGTACAAACATAAATTCATTTTATGATGATATTGTCCAACTAATCAAAGAAAAAGATGCATTTGTTGCATCAGGTATTGAATCAGACTTTTCTGTGCCTGCATCGTCAGGGTTTTCTCCAATTTCTCATTACACTGTGATAAGCAAGTCATTTGCCACTAGAACACCATTTGAAACAATTCAATCTGAAGTTGATGGAACTCTAAGTGCTCTCATTAATGGTGTATGCCCTGGAATATCTTGTACAAAGGCTTCTCCAAACTTTATTCCTTCCATGAACGATGACTTGAGCTTTTCTAAACGTCAACTGAATCTGTTCAAACCGATTGACTACCAAAGACTaagagaaagaaagaggaaCTTTATGGAATGGAGACCTGTGAAAAAGCTGCattgttgttgtaatggtaGATGCAATTCACCAGAAAGTGATGCAAAAATTGATAGTGTTAAAGAAGAAACAAGTGACAACGGGAAAGAAAACACCCAAGAGAAAGTTaatgaaagaaaacaaattgaaaacaatGAGGGAGATGAAGTAAAGAAAGACAATAGTGAGACTGTTCAAAGTGGTAAAAAGACAGAAATTCACACAAAGATGGAACATGACAACAAGAAAGAGAGTGGTATAAGTCAAGCAATGGATACAGAGACAACAAGCAGtgcaataaagaaagcctgtacTATCTGTCAACTTGAGGAAAACTATTTCAGCAAAGAAAGAAGTACAAAAATCTCTGATATTCTTGAAGAGTCAACAATTGGTAAGGTTCACCACAAAGAAAGGGTACTGTTCACTTATGGTTTTGTCAAACAAGAGGAGTTTGAGCATAGTGCATGGGTTATTTTAGCTCATTTGGATTACCTGGCTATGGCACTGTACGATATACCAGACATAAGAATACTGTGGTCAAAAGAGAAACTATTCCTACAACAGTTTGAAAGAGAAAATGAGGATTCTTTTGTAAGTTTTATCCCATTCAGTTTGTTTCCTCCTATCTACATCCATGATATCAGTTTTTGGCTGACAGCTGACTCAACTGAAAGTAATTTCTTCCAAGCTATTCAGGATGTTGCTGGTAATTTAATCAGTGATGTATGGTTTAGAGAGCGTTACATTGATGAAATCAAACACCAAGTAAGTTATAACTATCGTATGGTTTATTGGCGCTGTGATGGACCCTTATCACATATACAAACTGTGGAGATACAGAACTTGCTAAGACTTGTGTTGCTGGATTTAAACTTTCATCTGAGTTAA

Transcript

ENSDTNT00000002297

TGAAGTTTCTTGAAAATGGCTCTCATTAATCCTAAGTTTTACACAGGACCTGCGTTAATCGTTGGAGATGGTAATTTCTCATTCTCTGCCTGCTTAACGCAGTCTTTAGGTGAAATGAGAACTGAAGTTTTTGCAACTTCGCTTGATACACAAGAACAAGTTGAAACCAACCTTTTTGCAAAAGAAAACCTCGACAAAATATCTGCATTTTCATCTTTTAACGTCATTCACGGCGTCGACGCTACAAATTTAGAAGCAACTTTCAAGGATAAGATATTTCATAAAATCATCTTCAACTTTCCACATACTGGCGGGAAACTTAAAATCAGCAAGTGTAGAGATTTACTTGAAAAGTTTTTTATGTCAGCATCAAGACATATTGAGCCCACCAGAGGGGTAGTATGTGTCAGTCTTTGTCAAGGTCAAGGGGGTACTCCACAGGATTCTATCCAAAGGGATTATGGGAATACTTGGCAAGTTGTCCAGCAAGCAGCAAAAGCAGGTCTTATTCTAAATGATGTCCATCCATTCAGAGAGGCTGACTATCCAGGCTATTCTAGTGCTGGGTTCAAAGGCAGAATTAATCAAAGATTTACAGCAGATAAAGGATTGACATACATGTTTATACATGGTAGTCCATTACAACCAACACCTGACCTACAATCTTTTCTAAAGATGAGAAAGACTGCTTCAAATTCTTGCAAAAGCTTATTTCTCATTGACAACCATCCTGTGAGTAAAGCTAGGAGAAAAATTGAAACGTTTTGTAAAACTGAAAACAGGGATAAATTTGACATCAGAAATGATCATGAAGAAGGGAACGAAGTAGAATATGTTACAAGTCTTGAAGACAAACTAGCAAGCACATTGAAATTATCAAGTACAAACATAAATTCATTTTATGATGATATTGTCCAACTAATCAAAGAAAAAGATGCATTTGTTGCATCAGGTATTGAATCAGACTTTTCTGTGCCTGCATCGTCAGGGTTTTCTCCAATTTCTCATTACACTGTGATAAGCAAGTCATTTGCCACTAGAACACCATTTGAAACAATTCAATCTGAAGTTGATGGAACTCTAAGTGCTCTCATTAATGGTGTATGCCCTGGAATATCTTGTACAAAGGCTTCTCCAAACTTTATTCCTTCCATGAACGATGACTTGAGCTTTTCTAAACGTCAACTGAATCTGTTCAAACCGATTGACTACCAAAGACTaagagaaagaaagaggaaCTTTATGGAATGGAGACCTGTGAAAAAGCTGCattgttgttgtaatggtaGATGCAATTCACCAGAAAGTGATGCAAAAATTGATAGTGTTAAAGAAGAAACAAGTGACAACGGGAAAGAAAACACCCAAGAGAAAGTTaatgaaagaaaacaaattgaaaacaatGAGGGAGATGAAGTAAAGAAAGACAATAGTGAGACTGTTCAAAGTGGTAAAAAGACAGAAATTCACACAAAGATGGAACATGACAACAAGAAAGAGAGTGGTATAAGTCAAGCAATGGATACAGAGACAACAAGCAGtgcaataaagaaagcctgtacTATCTGTCAACTTGAGGAAAACTATTTCAGCAAAGAAAGAAGTACAAAAATCTCTGATATTCTTGAAGAGTCAACAATTGGTAAGGTTCACCACAAAGAAAGGGTACTGTTCACTTATGGTTTTGTCAAACAAGAGGAGTTTGAGCATAGTGCATGGGTTATTTTAGCTCATTTGGATTACCTGGCTATGGCACTGTACGATATACCAGACATAAGAATACTGTGGTCAAAAGAGAAACTATTCCTACAACAGTTTGAAAGAGAAAATGAGGATTCTTTTGTAAGTTTTATCCCATTCAGTTTGTTTCCTCCTATCTACATCCATGATATCAGTTTTTGGCTGACAGCTGACTCAACTGAAAGTAATTTCTTCCAAGCTATTCAGGATGTTGCTGGTAATTTAATCAGTGATGTATGGTTTAGAGAGCGTTACATTGATGAAATCAAACACCAAGTAAGTTATAACTATCGTATGGTTTATTGGCGCTGTGATGGACCCTTATCACATATACAAACTGTGGAGATACAGAACTTGCTAAGACTTGTGTTGCTGGATTTAAACTTTCATCTGAGTTAATGTAATGGTATTCATTGCATAAAGAAGGGAACAcacaaagtggccgtattaatggGGTGGCTGCATTGagtgggtaaattttatagaaattgTATttgcatgcatttcgtcggcaCTTGAAAAACTGCGTTAATTGGCCACAATAACGGGGTACGGGGTACACTGTACGTACCCATTTAGCATAATTAGTTAAGGGGTGtatggaccatttgacttttgaggggggatgGGTGATTTGGtctgtgcaggaaattttttttagcccgctggcatgcgaaTGGAATTTATTtcatagaaaagcaaagatttcaagTGGCGATTTTTGCTTGCGATTTTCAGGctgtgcaggaaatttattttcaaaatcacccacccccatcttcaaaagttaaatggtcggcccctaaatTAACCTTATATGTAAAATAAGCATCTGTATTGGATGAATATTATAATAAGTTTCCCAAACAAGAAGCATttcatgaataataaaacattgCCACTTGGATGACATGATATGCAAAAGGAAAACAGGGGTAGATTAATAGAGGGATATTTTTGATACAAATGATGACAAGACAACATTACAATGGTTAATAAtgatttaatcaaaatatattatcCTTTTAATCATAACCCAGGCACCATTAACACCTAATTGTAAGAATGTCGTCtcacaaaaatgaacattaaTTAGTAGAatatttagaaaggaataacaaaaaaaattgtaaatctTTAATGTCTTTTGTCACTTAAATAAATCCCTTTTCCACTAAataaagacaacatttttacaaTCAGGTCTATCTTTAaattttttgtacttttattgaaaatattttattccagTGCACTCATTAGGGGATTAAAACATACAACACTATAACCATGCTTCGacatattcagatatgcaaattaggggttttgataccatatttggtttctcaaatcaagatggctgcttcaaaGATCCTGCTGAATTTGTTGGCATTCAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BRP7	Ferredoxin-fold anticodon-binding domain-containing protein 1 OS=Homo sapiens OX=9606 GN=FDXACB1 PE=1 SV=3
Q3UY23	Ferredoxin-fold anticodon-binding domain-containing protein 1 homolog OS=Mus musculus OX=10090 GN=Fdxacb1 PE=2 SV=2
P08425	Phenylalanine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MSF1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003851 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10354 all species →	BMT5-like	rRNA (uridine-N3-)-methyltransferase BTM5-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019446 all species →	Domain	25S rRNA (uridine-N(3))-methyltransferase BMT5-like	Interproscan
IPR005121 all species →	Domain	Ferrodoxin-fold anticodon-binding domain	Interproscan
IPR045864 all species →	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR036690 all species →	Homologous_superfamily	Ferrodoxin-fold anticodon-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11538 all species →	PHENYLALANYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0070042 all species →	Molecular Function	rRNA (uridine-N3-)-methyltransferase activity	Interproscan
GO:0070475 all species →	Biological Process	rRNA base methylation	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDTNP00000002297.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.