Gene detail

Detailed information of ENSDTNP00000002424.1 in Metridium senile

Genomic Location: :...
NR annotation: XP_020898060.1, RNA-binding protein 26 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSDTNT00000002424

ATGCCTATGCAAGGAATGATACCAGGTTTTCCACAACAAGGACCATTTATCCATGGTGCACCCCCTATGGGTGGCATGCCAGTAGTACCGCCCATGTTAGGAGTACCGTCTGATACATTTCCAAGACCACCAAACCAACCGCCACCTCTTGTTAATAAGCCTAATGTATCAGAATTAAGTAAAGGAGATAAAAGTGTTGACCATGGTAAAGGCTCCTTACCAGAAACGTCAGTGGTAGCTAGTTTGAAGCAGGCTGTACCCCTGCCACCTCCGGTCATGATGATGCCTCCTGTAGACCCTGGGATGAGACCTCCATTATTACAGATGCCTCGTCCACCTAGACCTCCCTTCCCAATACCAGAAGATACCTACAACCCTGAGCAACCTCAGTTTGAGCGTCTTCCTGTGTGGATGCGTATTGGTGTACCAAGACCTAACATGCCACCTCCTGTCATGCCATATAACCCAAATATTGGTTTACAGTCAAGGGAACTGATTGCCATACCACCTCACCAATCACAGCTAACTGTACAAGTAACAACAGACAAACCAGGGGATAGCAATAGAGTAGTCATAGGACCTGATATTGGAAAACAAATTAAACTGGAACCTGTACATAACAACACGCACAACCAGAAACCAGCGTGGAGGAAATATAATGATACATTAGAACTGAAGAAAATCCCAAGAGAATTCAACAATATTACTAAACTGAATGAACACTTCCAGAAATTTGGTAGCATTGTAAACATCCAGGTGAATGCATTTGGTGATCCCGAAGCAGCCCTCATCACCTTCTCCAAACACTTAGAAGCAAAAGCTGCCCACACCTGCCCAGATGCTGTGTTGGGTAACAGGTTTATCAAGGTATTTTGGCACCAACCAGACAGAGATCAGCAGTCTACAGGAAAAGCTGGTCAAACCACAGAATTAAACAAGATTCCATCAAAACCAACCATGTTTCAAAGTGGAAAGACTACATTTGTACGACAAGCCAAACCAACTACTATATCAACTACTACATCAACTGATGCACCAACAGATGCACCAACAACTGAAACActtacaacaacagcaacggcagaatctacaacaacaacaacaactccaTCTACTACAACCACTAGTAGTATAGACACTACACCGACTACAGCATCAGCAGTACCACCGGCTAGTACTATTGTAACCGCACCATTAACACCAAGACTACAGCAACGACAGGACATCATGAAGAAAAAACTTGAaatccaaaaacaaaaacaggagCTATTAGACAAGCAAATTCAGCAGCAAAAGTTGCTGATTTCCAAACTGGAGAAGAAAAACCTGTCAGCATCAGAGAAAGAGAACATAATGAAGACACTAAAATCCCTAAGCAATAATATTGAATCCATCAAAAAGGAAGTAGAACTGGCTGCAATGACTGCTAAATCCAAGCAGAGCCCATCACAAGCAAGACAGTTGGCTCAAAAGGCTATCTTAGATCAAGAACTTGATTTGATAACCCACCAACACACTGGTGAAGATACAACAGAACTAAAGAAGAAAGTAGAGGAACTCAAGCAAGAGGCCAAATCATTGGGGCTTCTAGATGGTCCTATGAAAGGAAGAGGTGTCAGCATACCAAGAGGGCGTGGCTCTAGAGGACGAGGGCGTGGTCGAGGGCGTGGCTCCCGAGTGTGGACAAAAGAAAGTGGTTCATCGGATGCCTTCATTAAACAAATTAGAATAGCTGATGTGAAGTCAGAAGAAAAAGATGCTATCCTTGAGCATTTCATGGAATTTGGAAATGTGGACTGCATTGAGTATGATTCAGAGAAAACCTGTATGGTGCTGACATTCAGAACAAGAAAGGAAGCTGAAATAGCTTTCAAAGTCAGGaaacttaaaaataaaatattagaaCTATCATGGTACAAACCTCCTGTGCCCACCCCAGTGAAAACTACACCAAGCCAACCAGCAACAGTAACTCCTGAAAAAAGACACACCCGTAGCTCAACATTAAGCTCTAGCAAGCTTGATGATGAAGATCTAGGCCTGGACTTGGATGGAGATTTGGACAAacatgttgatgaagatgatgaagcaCTGCTGTTGGGTGGTGACTTTGACGAGGAAGAAGATGACGAAGAAGAGAGGTCATGGAGGCGATGA

Transcript

ENSDTNT00000002424

ACTTTGTGTAAGCTTGTGTGAATCCATGAGAAcgtttaaaaaaatgcattttcaCTCCAAGAACGTTTTCAAAAAGTACTTCAGATGTTAGCTTGGAGTTTGTGTTATAATAAAAGGAGGTTTCTTTACACAACAACTCACTGAAACGTTTGAAAACTTATAAAAAACGCTGATTACGTGAAGGTGTGAAATGTACGTTTACGCTTGAACAAGGATTTTGTATCAGAGGAGAGCTGTGTCCACATGACCATGGCAATGACCCAGTAGTTATACAAGACATGCCTATGCAAGGAATGATACCAGGTTTTCCACAACAAGGACCATTTATCCATGGTGCACCCCCTATGGGTGGCATGCCAGTAGTACCGCCCATGTTAGGAGTACCGTCTGATACATTTCCAAGACCACCAAACCAACCGCCACCTCTTGTTAATAAGCCTAATGTATCAGAATTAAGTAAAGGAGATAAAAGTGTTGACCATGGTAAAGGCTCCTTACCAGAAACGTCAGTGGTAGCTAGTTTGAAGCAGGCTGTACCCCTGCCACCTCCGGTCATGATGATGCCTCCTGTAGACCCTGGGATGAGACCTCCATTATTACAGATGCCTCGTCCACCTAGACCTCCCTTCCCAATACCAGAAGATACCTACAACCCTGAGCAACCTCAGTTTGAGCGTCTTCCTGTGTGGATGCGTATTGGTGTACCAAGACCTAACATGCCACCTCCTGTCATGCCATATAACCCAAATATTGGTTTACAGTCAAGGGAACTGATTGCCATACCACCTCACCAATCACAGCTAACTGTACAAGTAACAACAGACAAACCAGGGGATAGCAATAGAGTAGTCATAGGACCTGATATTGGAAAACAAATTAAACTGGAACCTGTACATAACAACACGCACAACCAGAAACCAGCGTGGAGGAAATATAATGATACATTAGAACTGAAGAAAATCCCAAGAGAATTCAACAATATTACTAAACTGAATGAACACTTCCAGAAATTTGGTAGCATTGTAAACATCCAGGTGAATGCATTTGGTGATCCCGAAGCAGCCCTCATCACCTTCTCCAAACACTTAGAAGCAAAAGCTGCCCACACCTGCCCAGATGCTGTGTTGGGTAACAGGTTTATCAAGGTATTTTGGCACCAACCAGACAGAGATCAGCAGTCTACAGGAAAAGCTGGTCAAACCACAGAATTAAACAAGATTCCATCAAAACCAACCATGTTTCAAAGTGGAAAGACTACATTTGTACGACAAGCCAAACCAACTACTATATCAACTACTACATCAACTGATGCACCAACAGATGCACCAACAACTGAAACActtacaacaacagcaacggcagaatctacaacaacaacaacaactccaTCTACTACAACCACTAGTAGTATAGACACTACACCGACTACAGCATCAGCAGTACCACCGGCTAGTACTATTGTAACCGCACCATTAACACCAAGACTACAGCAACGACAGGACATCATGAAGAAAAAACTTGAaatccaaaaacaaaaacaggagCTATTAGACAAGCAAATTCAGCAGCAAAAGTTGCTGATTTCCAAACTGGAGAAGAAAAACCTGTCAGCATCAGAGAAAGAGAACATAATGAAGACACTAAAATCCCTAAGCAATAATATTGAATCCATCAAAAAGGAAGTAGAACTGGCTGCAATGACTGCTAAATCCAAGCAGAGCCCATCACAAGCAAGACAGTTGGCTCAAAAGGCTATCTTAGATCAAGAACTTGATTTGATAACCCACCAACACACTGGTGAAGATACAACAGAACTAAAGAAGAAAGTAGAGGAACTCAAGCAAGAGGCCAAATCATTGGGGCTTCTAGATGGTCCTATGAAAGGAAGAGGTGTCAGCATACCAAGAGGGCGTGGCTCTAGAGGACGAGGGCGTGGTCGAGGGCGTGGCTCCCGAGTGTGGACAAAAGAAAGTGGTTCATCGGATGCCTTCATTAAACAAATTAGAATAGCTGATGTGAAGTCAGAAGAAAAAGATGCTATCCTTGAGCATTTCATGGAATTTGGAAATGTGGACTGCATTGAGTATGATTCAGAGAAAACCTGTATGGTGCTGACATTCAGAACAAGAAAGGAAGCTGAAATAGCTTTCAAAGTCAGGaaacttaaaaataaaatattagaaCTATCATGGTACAAACCTCCTGTGCCCACCCCAGTGAAAACTACACCAAGCCAACCAGCAACAGTAACTCCTGAAAAAAGACACACCCGTAGCTCAACATTAAGCTCTAGCAAGCTTGATGATGAAGATCTAGGCCTGGACTTGGATGGAGATTTGGACAAacatgttgatgaagatgatgaagcaCTGCTGTTGGGTGGTGACTTTGACGAGGAAGAAGATGACGAAGAAGAGAGGTCATGGAGGCGATGATATTTTACTATTAATATTCTTACTCAGCATAGCTGCTTTTAGTATCATTGTGAATAGGTTGCAATCATTCCTATATTCTGTTAAATGTGATAATCTGcgttataataatatatcaatattgtAAAATATGTCAGGAGCTAAGTCaccactttttttttttttttcaattaactttgtAATCATTGTAACTCTTCAAGACTTCTAaagaatcaaaataataaaaagaaaagaacaacaaccaacaacaaACTAGAATTGGGGTGAAAAGAAGCTTGTTTAGCAGCTCACAGCATGGAAAAAAGTATTACAATGAGAACGTGAAAGagagaaaatactacaaaaaaTGAACAACCAAAACATTTACAAAAGTCAATGGTTAATAATGCTTTGGTAGAAATGATCTACCTGTATATCTACGTTATCAAGATGAAGAGAAGATCAAGACAAGAAATCAAGATGTTGTTACGACAAGGACAGACAATGGTGAGTACATGAAGATTAGGTACAAAAAATTATCTTTGACATAATATTTAACATCAATTTTCTTGGCCATATTTAGGAAGTTCATATATCATTATCAGAAATTTTTTtccactctaatcctatatttTCTGTCTCCTGGTACAACAGCCTGATTCGCTAATCACACCCATGATTGTAAattgctggtttacagcagtcagataagtcctccacatattcACAACTGTAc

Protein

Uniprot

Uniprot term	Description
Q2T9I5	RNA-binding protein 26 OS=Xenopus laevis OX=8355 GN=rbm26 PE=2 SV=2
Q5T8P6	RNA-binding protein 26 OS=Homo sapiens OX=9606 GN=RBM26 PE=1 SV=3
Q6NZN0	RNA-binding protein 26 OS=Mus musculus OX=10090 GN=Rbm26 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14605	Nup35_RRM_2	Nup53/35/40-type RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045137	Family	RNA-binding protein 26/27	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14398	RNA RECOGNITION RRM/RNP DOMAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13192	RBM26; RNA-binding protein 26	-	Spliceosome	ko03041	deepkoala