Gene detail

Detailed information of ENSDTNP00000004881.1 in Metridium senile

Genomic Location: :...
NR annotation: XP_020906257.1, protein Red [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSDTNT00000004881

ACGTCTGTCTTATCAAGCTATAAACAAAATGTCGCACGCGGATGGAGCGATGTTTTCTAACCCTTTGGCGCCGCCATCTGGGAGCCATCATGGGCATAGCGCAGAGGACATGTCAGCGATGACAAATGCAGACTTCAGGAAACTTCTGATGACACCACGATCTGCTCCTAAAGCTGCACCACCATCAGCAAAGAAACCTTTAGAGTTAACATCAAGTAAACCTAGAGAttacaatgaagatgatgatccAATGGcacaaagaagaaaaaagaaaaaGTATTATGCTAAACTGCACAAGCTAGAAGAGGAGAGGGAGAAAGAACTGGCTTCTAAATATCGTGACAGGGCAAGGGAGCGACGTGATGGAGAAAACCCTGATTACCAAGCTACTGATACTCTCAGTGCTACTGCCAATTATAGAGCTGTAGGCCCAACACAAGAAGAAAGTGATACAGCAGCAGAGAGAAGGAGACTGGCTATCCAGGAGAGTAAGTTCTTGGGTGGTGATATGGAACATACCCATTTGGTGAAAGGACTTGACTTTGCTTTACTGCAAAAGGTAAGAAGTGAAATAGATGAAATTGGGGAAGATTCCATTGGGGAAACATTGAAGAAACTGAAACAGAAAGAAGGGGATGAAGGGGAAGCCGATGAAGATGAAGAGCAAGAATTTACAACAAGACTTGGTCAGAGAATCTACAAAGCAGTGTTCAAGGTGAAGCCTCCTGAAAAGAATGAACACTTTCAACCTGGAAGAATGGCCTATGTATTTGATGTAGAAGATGAATATGCTGAGACAGATATCCCAACCACTTCAATAAGAAGTAAAGCAGATTGTCCTGGAATGGAGACCCAGACCACATTGACCACCAATGACATTGTCATCAATAAACTGACACAAATCTTGTCATACCTACGACAAGGGATGAGAAATAGCAAGAAAACTAAGAAAAAGGATAGAGGAAAAGACAAGGAGAAGGACACCAAAGTCAAACCCCATTCTGTTGAGGATAGTATTTATGGTGATATTGGAAGTTTTAACACATCCCACACAACCAGAGACACCAACAACAAGAGAGATAAGCACAAGGAGAAAACCAAAGAAAGATCACATGAGAAATCAAGAACCAGTGACCGTGAATCACACAAAAGAACCAAATCAAATGAATACTTTGAAAAACCTGCATATTCAGAGAAAGAGGAGTCCTTCGATAGGAAAGATGTCAATGTTGCTGAATTTGCTAAAGACATCAATGAAAAATTCAGAAAAAGGGGACACAGTGACGAATGGAGCCATTCAGATTCCAAATCTAAATCTAAAAAATCCAAGAGTAGCCGGGATGTTCCTGATAGTTATATGGAATGTTATCCAGGAGCTGCTGAAGTTGGTTATGAAAGTGAAGATGAAGAAGCCGATTACACAAAAATGGACTTGGGCAACAAGAAAGGTCCAATTAAAAGATGGGATTTTGAAAGTGATGAACAATACAATAAGTACATGGAAACTAGAGAAGCCCTTCCAAAGGCTGCATTTCAATTTGGAATTAAGATGTCTGAAGGGCGTAAAACTAGACGTACAGGTCCAAAAGATGAGAAAGCCAAACTGGATAGAGACTGGCAGCGAATCAGCAAGATGCTTCATAACTCCAAGAAAGATAGTGGTGACTATGACAGAAGAGAGAAAAGATCAAAACGTGATTGACCTACAGAAAAATGTTGGATACATCATGAGGCACAGAATGCTATTAATTTCTTATTTTATTCATATTGTAGCTTTTACAGTACATCAAATAAAGCACTACTATCTCAaattttccttctttttcttAAGCTATTTAGTGttaccccgggggggggggggtactctctttgtccaaatggaccctaaaaggtacgcactggaaatattttaaccctaaaaggtacgccgatcacccctaccacttggataaagagagaacccccccccccccccccgggagtgTTACCCTCGCaaaataaagttttcattcatctaaagcctggttcccatataattGCTACAATCGCCAGGATCGCTGTGATGGtgctttggttttgtgaaataataaaaatatcactgttgactaatggttgaagcttaaatttgacaaaataaacctaaacataaaaaatcagtgtcgatgttgtttaatcacaaagaactctgagctatattctgatgaCCAAACATGATTTTTGGCGACCGCAGCAatcatatggaaaccaggctttAACCTTATTATGTGCATATGGATACACATTTTCCAAATTTGCATGGCTGACCACAAAACAATTAATTCCAGTTGAGGCTCGGTTGGATATGTTTTCACTGTATTTTATTCAGCCTCCACTTGAATCTATTGGTTTATGAGCAGTGAAGCAAATCACGGAAAGGTATATCACCTATGTTTggagtaaaataaaaaacaaaaccaTTTTATAGAAAAGAGTATTACTTTCTGATGGATAAGATGTTAAAATCTcactattaaaataataaattatacagTTAT

Protein

Uniprot

Uniprot term	Description
Q13123	Protein Red OS=Homo sapiens OX=9606 GN=IK PE=1 SV=3
Q66HG8	Protein Red OS=Rattus norvegicus OX=10116 GN=Ik PE=1 SV=1
Q5NVI3	Protein Red OS=Pongo abelii OX=9601 GN=IK PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07807	RED_C	RED-like protein C-terminal region	Family	Interproscan
PF07808	RED_N	RED-like protein N-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012492	Domain	Protein RED, C-terminal	Interproscan
IPR012916	Domain	RED-like, N-terminal	Interproscan
IPR039896	Family	Protein Red-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12765	RED PROTEIN IK FACTOR CYTOKINE IK	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13109	IK, RED, RER; IK cytokine	-	Spliceosome	ko03041	deepkoala