Gene detail

Detailed information of ENSDTNP00000005877.1 in Metridium senile

Genomic Location: not available for this species
NR annotation: KXJ22893.1, tRNA 2-thiocytidine biosynthesis protein TtcA [Exaiptasia diaphana]
Species abbreviation MSENI · all data for this species · gene families

Sequence

CDS

ENSDTNT00000005877

ATGGCGGCCTTGAATCATGGCTCTAGAAAATTTTACGAAGTCCCAAGTGATTATCTGTCGAACAGAAaggataaaaaacaaatttctcAGAAAGAAACGGCCAGAGAACTCTTTAAGTATATAGAAGACAATTGTATAGGGAAAGACACCACGTTTATTGGACCTTACGGAGCAAGGAAAGGTGAGAAAACTATTGATCGGTCTTTGACATTCATTGAAGACTACATCAGAGAGCAAGTCCTTCCTCACTATGGCAACACGCATACAACCACCACAGTGACTTCTTTACAGACAACACTTTATCGACATGAAGCAAGAGATATCATCAGAAATGCTGCCAATGCCGGCGAGGGTGATGCTGTTATCTTTACAGGAAGTGGATGTACTGCAGCCGTTCACAAGCTGATACATGCTCTCAACCTCAGACAAGCACCAGTAGTATTCATTGGTCCGTATGCCCATCATTCCAGTATCCTACCATGGAAAGAAGCTGGAGCTGATGTTGTCTGGATCAAACAAACTGATGATGGGGTGGTAGATCTACAGGACTTGAAGGAAAAACTACAGCcattgattggttgttttgcTGCCGCATCCAATGTTACTGGTATCTTAACAGACACTAATGCAATTACTGCAATCCTGCATCGGCATGGAGCCCTTTATGCAAGCGACAATGTACATAGTTACACTGACCAGTCTTTAGTGTATAAAGATGCCATATTTTTGTCAACTCACAAGTTTGTTGGTGGTGTTGGAACTCCAGGAGTTCTTATTGCCAAGAAGAAACTCTTCAGAAATCCTGTACCTTCAGGTTGTGGTGGCGGCAGTGTATTCTTTGTGACAGAGAATAGCCATCGCTATCTCAAAGAGACAGAGACCAGAGAAGAGGGTGGTACCCCTGCTATAGTAGAGTCTATCAGAGCTGGTCTTGTCTTTCAACTAAAAGAGGCTCTAGGGCATGAAAACATCATGGAGCGGGAAGAAAAGCTTTGCAGTTTGGCCTTGTCTTCCTGGTCCGATGTATCCAATCTTGTTCTACTTGGTAACAAGACAACATATCGTCTTCCAATCTTATCATTTCTTATCAGACATCCTGAGAGTCGTCTGTTTCTACATTTTAACTATGTCAGTACTTTGTTAAATGATCTATTTGGTGTACAGTCACGTGGTGGATGTGCTTGCGCTGGTCCATATGCACAGGACTTGCTTGGAATGGACGAAGACCTTGCCAAGGAATTTGAGTCCCTGCTGCTGGAAGATAGtCGTCTTGATCGTGTTCATCTCAGACGATACAATGAATACTCTGAACATGAAATACTCAGGCCTGGTTTTGTTCGTCTTAATCTACCATACTTCATGTCTGATGATTACGTACATTTCGTACTAAAGGCTGTTGCCATGGTAGCAGACCATGGGTGGAAACTGCTTccacagTATATGTTTAACCCTGAAACTGGAGAGTGGAAGCATCGACGTCACAAGGTTTTCCGAGATCGTAAATGGCTTGGTTCAATAAGTTATACTAATGGTCACATGACTTATCCAGCCCCTGCATCAACAGAAGGACTCCCCGAAGATTTACAAGACTGTTTGTTCAAAGCAAGACAGATATTCGAGAACGCCGAAAAGGCCGTCACCACTCTCAGTGACCACACCCTCCTACTCAACGAAGAGGCCGAAAAGTTACGATGGTTTTTACTACCAAGCGAAGCAGCGGCTGTACTCTTACGTAAACCTCCCCCTCACCTCCCTAAACCTCCTCCTTTTACACCTCGTACATGGGGGCAGTCTAGCAATAAGTACAACACAGTTACACCTAcaacaaaagagaaaaagacTAAAGAGATTAGTTCTGAACATTTGTTGAAACAAACATCGCAGGCAGAGGTTCAAGTTTCTTTGTGCAATAGTCAAGCTGATTCAAGCTGTGCTAAATCAGATTGTGAGAATATGTTGAACGATTCTTCCAGTAATACGGGGTTAAATGGGGCTAGTTTATGTTTGGGTGACAACACAACGAATTCAAGTACACTTCAAACAGAAACCCAACAAAGTGTTGATTCTGGATTATCACATAATAGAACTACCGATCATAATGAACATCCAAGTATTGATAGCGCATCATCTAGAGTTGACTGCAGGGCGTTAGGACAAGCATGTCCATTGGTTAAACAAACCAAAACTGACAACAAGACGAAGCAAAACAAACATGATTCTAAAATAGAGAAGACAGTCAAACAAACTGCGGGTACAAAACCAAAGTTTTTTCATCCTCCAAAAAGCATCTTCAAGCCCATGGCTGAGGCTATCGAAGAATTCACCATGATACAAGATGGCGATCGTATTATGGTGTGTTTGTCTGGTGGTAAAGACTCCCTTTCAATGCTGCATGCTCTTCATCAGTATAAATATCAAGCAAAGTCAAAGGGTATCACGTTCGATATTGGTGCGGCTACTGTAGATCCTCAATCAACAGCATACGATCCTAGACCTCTCATCCCCTACCTTGCTGCTCTTGGTGTCCCGTATTTCTTTGAAGAACAGGGTATAATCCAACAAGCCGCCGATCTTGCCGTCTGTGAGTCGATCTGTAGCTTTTGTTCACGTATGAAGCGTGGTCGTCTATACGCATGCGCTAGACGTGAGGGTTATAATGTACTGGCGATGGGTCAACACTTGGACGATTTGACGGAAAGtttCCTGATGTCAACGTTTCACAATGGTTTACTACGTACAATGAAGGCCAACTACACCGTACAGGAAGGAGATTTGAGAGTCATCAGACCTTTAGTGTTTGTAAGAGAAAAAGAACTTAGGCAGTTTGCTGACAAGGCTAAGCTACCTGTCATTGCAGAAAACTGTCCGGCATGCTTTGAGGCACCAAAGGAGAGACACCGCACCAAGCAATTACTGGCGGCTCAAGAGCTTCTCTTCCCTGAGATTTACAGCAGTTTACTGACAGCAATGAAACCATTAATGGCCAAGAACAGAGTGGGAATGGAATCTACTAAAATGAAAACCGCTGACTATGATGAGTTCTTATAA

Transcript

ENSDTNT00000005877

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B6ELU0	tRNA-cytidine(32) 2-sulfurtransferase OS=Aliivibrio salmonicida (strain LFI1238) OX=316275 GN=ttcA PE=3 SV=1
Q5E590	tRNA-cytidine(32) 2-sulfurtransferase OS=Aliivibrio fischeri (strain ATCC 700601 / ES114) OX=312309 GN=ttcA PE=3 SV=1
B5FE41	tRNA-cytidine(32) 2-sulfurtransferase OS=Aliivibrio fischeri (strain MJ11) OX=388396 GN=ttcA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001160 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00266 all species →	Aminotran_5	Aminotransferase class-V	Domain	Interproscan
PF01171 all species →	ATP_bind_3	PP-loop family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR000192 all species →	Domain	Aminotransferase class V domain	Interproscan
IPR011063 all species →	Domain	tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43686 all species →	SULFURTRANSFERASE-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for ENSDTNP00000005877.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDTNP00000005877.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.