Gene detail

Detailed information of ENSDTNP00000007920.1 in Metridium senile

Genomic Location: not available for this species
NR annotation: XP_020896260.1, plasminogen activator inhibitor 1 RNA-binding protein isoform X2 [Exaiptasia diaphana]
Species Metridium senile · all data for this species · gene families

Sequence

CDS

Transcript

ENSDTNT00000008183

CTACAAGTTCTCTGCACAACATCCTGAGCTGAGAAAGAAATAGATTGAATCTATCAAAATCAAGCCTATTTTTACGCCATCCATCGAAAATGGATGCAGTAGAGTATAGCATAGGCGTTAACAATCGCTTTGGGCTTTTGGCGGACGACGAAGAGCCATCAGATGTCGTCCAGGATTCAGACAAATCCGCCAAAGATAAAAAGGACAAGAAGGCAAAAAATGTTCGACCTGTCAAGGACACGAAACTTCAGCCTACTAAGAAAGAGAAGGAGGCCGCGAATGAAGAGACGAGAAAGGACGCTCGCGACAACAAGAAGGGCGGACGAGTCCCCAAAGATGGAGTAAGACGAGAAAACGAGAAAAACACTAAAATCTCAAATGGTCCTCGCGAAGATCGCGAAAATATCCCTCCACGAGGCGGCAAAGGAGGTTTTAATCGGCGAAAAGAGAACGAGGGGGCTCCAGAAGGCGATTCTCCCGCCAAGGATGATAAGAGGGAGGCAGGAAGCGGCATGGGGTTCGGTGGTCGCGGTAGAGGAGGCCGAGGAGGCAACGTTGCTAGAGGAGGTCGTGGTGGCTTCGATCGTGGAGCAAGAGGCGGCCGTAAGAGGGACTATGATAGAAGAAGCGGCAGTGACAGAACGTCTGTCAAACCTCAGGACAAGAGGGATGGAGGTGGTTCATTCAACTGGGGAAACCCTGCTGATGCCCAAGAGGGAGAAGTCTTTGATGAAAAGAAGACTGAGTGGGAAGAATCCAGCCCAGATACTGAGGAAACCAAAGCCCCAGCTGAAGATGGCCCAGTTGAAGATGCTGCGGATGCTGAAGAGCCTAGTGAAGAGGCCAAGCAAATGACTCTTGAAGAGTGGAAGGAACTACAGGAGCAATTCCGCTCAAAAATAACATTTGAGGTCCGTAAACCAGGAGAAGGAGAGAAGAAGGGACAATGGAAGAACACCCATCTCCTTCAAAAGAAGTCTGATGAAGAGGAAAGACAGCAGCTTTATGAGGAAAGAATAAAGACCTCTGGCCGAGTCAGACAAACTGTTCCAGGCATACAGTTCTCATTTACCAACACTGAGACTCAAGAAAACAGGCGCGGTGGACGCGGTGGCGGACGAGGTGGTCGTGGCCGTGGTGGCGGAAGAGGAAGCGGCCGTGGTAGAGGAGGCAGGGGAGGCTTTGGAGGTAGTCgtgatggtggtgctggtgcAGGAAATGCTGATTTTGAAATCAACCAGGAAGAATTTCCAACACTGGGTTAAAACCAAAGCAAGATCTGATAGTTTTGGCTAGAGACTTAATAAATTGGTGCCGTATCTGTAATAGAAGACTACAGCCATTTGGGAGTGGGCTGTTTGCCGTCCCCGCCACCCCCGGACTTTACATATACCAAAAACTACAATAGATCCTACAAGATCTCAGATGTAATTGAATGTCGGACTACTTATGAGGCCATACTTTTTATAATGAGTTGTTTGACAGAATGGTAGAAATCCCTGCATTGTGGTCTTGTGTCGTAGTAGCACAGTCATTATTCTTTGCTAGTGCTATGAAGATGTGTTTgataatagaccatttcacggtTCTTGTCGAGCAGCCTCagtagcatgtaatatattcgttagtatttgactacagctcgctttaatttaaggaatgtacacattaccCAAGAATTTAAACGTGTAAAAATTCCACAGGCTTTAGTCacattctaaagaatatattacacaagGCTGTTTGACGATTACTGTTAATCGATGTATTGTTTTCGCTGACGAATGGCTATCATGTTGACGCAAAAGGGAAGAGCAAAACCTCGAAtttaacttgaaaaaaatgGTGTAAAAACTTAGAAGTTGAAAAATTACAATGAACGCAGAATAAAGTGGTCACAATATTCAATAAATTGAATCATAATGTTTAATTTATGCAGGGTTAATATTGAAAGCGTTATAAAATTCTCGTGCATGAGAGGATAAATAatccagaacaata

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NC51	SERPINE1 mRNA-binding protein 1 OS=Homo sapiens OX=9606 GN=SERBP1 PE=1 SV=2
Q6AXS5	SERPINE1 mRNA-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Serbp1 PE=1 SV=2
Q9CY58	SERPINE1 mRNA-binding protein 1 OS=Mus musculus OX=10090 GN=Serbp1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004881 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04774 all species →	HABP4_PAI-RBP1	Hyaluronan / mRNA binding family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006861 all species →	Domain	Hyaluronan/mRNA-binding protein	Interproscan
IPR039764 all species →	Family	RNA binding protein HABP4/SERBP1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12299 all species →	HYALURONIC ACID-BINDING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13199	SERBP1; plasminogen activator inhibitor 1 RNA-binding protein	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.