Gene detail

Detailed information of ENSDTNP00000008663.1 in Metridium senile

Genomic Location: not available for this species
NR annotation: XP_020894452.1, pre-mRNA-splicing factor RBM22 [Exaiptasia diaphana]
Species Metridium senile · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3B7L8	Pre-mRNA-splicing factor RBM22 OS=Bos taurus OX=9913 GN=RBM22 PE=2 SV=1
Q9NW64	Pre-mRNA-splicing factor RBM22 OS=Homo sapiens OX=9606 GN=RBM22 PE=1 SV=1
Q4R4J1	Pre-mRNA-splicing factor RBM22 OS=Macaca fascicularis OX=9541 GN=RBM22 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007063 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21369 all species →	STL11_N	STL11, N-terminal	Domain	Interproscan
PF00642 all species →	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036855 all species →	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR048995 all species →	Domain	STL11/RBM22-like, N-terminal domain	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR039171 all species →	Family	Pre-mRNA-splicing factor Cwc2/Slt11	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14089 all species →	PRE-MRNA-SPLICING FACTOR RBM22	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000974 all species →	Cellular Component	Prp19 complex	Interproscan
GO:0017070 all species →	Molecular Function	U6 snRNA binding	Interproscan
GO:0036002 all species →	Molecular Function	pre-mRNA binding	Interproscan
GO:0071006 all species →	Cellular Component	U2-type catalytic step 1 spliceosome	Interproscan
GO:0071007 all species →	Cellular Component	U2-type catalytic step 2 spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDTNP00000008663.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.