Genomic Location: chr12:16267705...16269867
NR annotation: XP_020897552.1, LOW QUALITY PROTEIN: microtubule-associated proteins 1A/1B light chain 3A-like [Exaiptasia diaphana]
Species Metridium senile · all data for this species · gene families
| CDS |
| ENSDTNT00000011195 |
| Transcript |
| ENSDTNT00000011195 |
| Protein |
| ENSDTNP00000010751.1 |
| UniProt accession | Description |
|---|---|
| Q2HJ23 | Microtubule-associated protein 1 light chain 3 alpha OS=Bos taurus OX=9913 GN=MAP1LC3A PE=2 SV=1 |
| Q9H492 | Microtubule-associated protein 1 light chain 3 alpha OS=Homo sapiens OX=9606 GN=MAP1LC3A PE=1 SV=2 |
| Q91VR7 | Microtubule-associated protein 1 light chain 3 alpha OS=Mus musculus OX=10090 GN=Map1lc3a PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001129 (this species only) · gene tree & orthology |
| Ubiquitin family | ULD|UBL|ATG8 · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02991 all species → | ATG8 | Autophagy protein Atg8 ubiquitin like | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR004241 all species → | Family | Autophagy protein Atg8 ubiquitin-like | Interproscan |
| IPR029071 all species → | Homologous_superfamily | Ubiquitin-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10969 all species → | MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000045 all species → | Biological Process | autophagosome assembly | Interproscan |
| GO:0000421 all species → | Cellular Component | autophagosome membrane | Interproscan |
| GO:0000422 all species → | Biological Process | autophagy of mitochondrion | Interproscan |
| GO:0005776 all species → | Cellular Component | autophagosome | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006995 all species → | Biological Process | cellular response to nitrogen starvation | Interproscan |
| GO:0008017 all species → | Molecular Function | microtubule binding | Interproscan |
| GO:0016236 all species → | Biological Process | macroautophagy | Interproscan |
| GO:0031625 all species → | Molecular Function | ubiquitin protein ligase binding | Interproscan |
| GO:0097352 all species → | Biological Process | autophagosome maturation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10435 | MAP1LC; microtubule-associated protein 1 light chain | - | Cytoskeleton proteins | ko04812 | deepkoala |
Genes whose expression across the transcriptome samples of Metridium senile tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Metridium senile, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
