Detailed information of ENSDTNP00000014701.1 in Metridium senile

Genomic Location: chr14:1969341...1973524
NR annotation: XP_020897014.1, uncharacterized protein LOC110235880 [Exaiptasia diaphana]
Species Metridium senile · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8GWT4Protein arginine N-methyltransferase 1.5 OS=Arabidopsis thaliana OX=3702 GN=PMRT15 PE=1 SV=2
A2X0Q3Protein arginine N-methyltransferase 5 OS=Oryza sativa subsp. indica OX=39946 GN=PRMT5 PE=3 SV=2
Q6YXZ7Protein arginine N-methyltransferase 5 OS=Oryza sativa subsp. japonica OX=39947 GN=PRMT5 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0015974 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17286
all species →		PRMT5_CPRMT5 oligomerisation domainDomainInterproscan
PF05185
all species →		PRMT5PRMT5 arginine-N-methyltransferaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029063
all species →		Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR025799
all species →		FamilyProtein arginine N-methyltransferaseInterproscan
IPR035248
all species →		DomainPRMT5, oligomerisation domainInterproscan
IPR035075
all species →		DomainPRMT5 arginine-N-methyltransferaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10738
all species →		PROTEIN ARGININE N-METHYLTRANSFERASE 5Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0008469
all species →		Molecular Functionhistone arginine N-methyltransferase activityInterproscan
GO:0016274
all species →		Molecular Functionprotein-arginine N-methyltransferase activityInterproscan
GO:0018216
all species →		Biological Processpeptidyl-arginine methylationInterproscan
GO:0034969
all species →		Biological Processobsolete histone arginine methylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSDTNP00000014701.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Metridium senile tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Metridium senile, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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