Gene detail

Detailed information of ENSDTNP00000015478.1 in Metridium senile

Genomic Location: :...
NR annotation: XP_028517121.1, nucleolysin TIAR isoform X3 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSDTNT00000016157

CAATGACATCCATGTAGAGGGGGTTTGATCAGAGTACTGAACCAGAACAACTATGACATGACATGTCAAACACAGCCTATCAACACACTCTATAACCTATTTAATACcttacttttatttcaagtcTAAAATTATATGTGTATAAAAGTGAATTGGGCCACCAATAGCCAGGGAATGAAGAGAGGAGACACAAATAaTCATCACCACATATTTGTGGGTGATCTTGCGgaagatattgatgataatacatTACGGAAGGCTTTTGAACCATTTGGAGAGATATCGGAAGCAAGAGTTGTCAAAGAGGCTAACAAAAACAAGTCCAAGGGATTTGGATTTGTTGCTTTTGTCAAAAAAGAGGATGCATCTAAAGCTATTGCCGATATGAATGGGACTGATTTGATGGGGAAATCTATTAGAACCAATTGGGCATCTAGGAAAAACAACCCTGTACAGAGTAAGTGGACAGGTAAACCTTTAAACTGGGATGAAGTATATCACAAATCTTCTCAAATAAACACTACAATTTATGTTGGAAATCTACCTCCTGAAACTAAAGATTATGATcttcaaaatttgttttcacaatATGGTCAGATTTTGGAAATCAAATTATTTGCTGAGAAAGGCTATGCATTTGTTAAATATGGCAATCATAATGATGCAACCAGTGGAATAGTAGGAACTCATAATCAGACTACATTAGGTGATCCTAATAACCCTTATTTACTACGAtgCTCCTGGGGCAAAGAAACCCCAGAAATGATGAACTTTCAACAGACTGGTAGTTGGCAGcaaCAGTACTATGCACCCTATTACTATCAACAAGGACAGtctcaacagcaacaacaaatcCAGCATACACATCACCAGCAACCACAGCAACAATATGTACAGTATCCTGGATATGCCATGTACTTTCAACAAGGTGCTGCTGCTTATCCAGCTGCCCAAGGTATGGCAATGTATCCTGTACAGAATTATTCAGGTGTTCAGATGACCTCTTCCAATACGTCAGGCATTCAGACTCCAACCCAATCACCCCAAGTAATGGGAATGCAGGCTACTGGTTTAGTACCTCCACAAGGAGCCCCCCAGGCTTCTTACGCCCTGCAGCCGGCTGCAGGCTACCATGCCCAGTAGATAACAACGATAGAATGTTGTGTAAACCTGTACTAGTACTCTGATGGTATAGATAGGATAACTCTACATGAAATGTTTAGTACATTGATGCTTATTTTATCATGGTAGACACCAGATGGAAATATGGTGACCTATTTAAATAGCTATTGTTTTCGATTGACCAGCctcatatataattataaaaactctattgtgtttcaattgccagtcagtccagaacaatagttgGTCTACCTGTTTCACCTTTGTCTATTTGGTAATAAGCCATCCCTCACCCTTGTTTATTGTTCTGGATGTAGATGAAATAATGGAATCAGAGTAAGGTAGTAGGTTAACacataaaaatacaacaaaagaTGTCAGAACATCAGTAAAATATAGAGAAAATAAAGCCAACATTTACTGAAGTGAACACGGCTAAATATAAAAATGCAATCAAAATAGGTGTTGAACCCTTTGCTGTTGAAAAAAGACTTGCTTGTGTGTAGAAAATGTGATTGCTGTCTCTGGCTGATTTTACAAGGCAGCAAATATAGCTAAACTAGATAAAGCAGTCATGTACAGTTTCtcaaaactatattttatatttattatcagCTGTGCTTGACATGGCTCTCACACACTCCTGACACTGTCCTTCGTCTATTTTCCACTGTTTTGTGGTCACATTTTTCTAGTATTTATCAGAACAAAATGTGCTTTTTCAACATGCAACGGTTCTCATTTCACTACGCTGCTTGTAAGTAGTATTCACActcttgtctgtctgtctgcctgtctgtctgcctgtacATCACTGTATGTCTGTTTCACTGTAGTTGTATTTCTCTCAAGTAAGATATTGTGTCACACAAATTAATTTTTGCTGTGCTAAAGAGAAAAAGGGAATAAAACAAaccaatttttaaaatgtgtttgtAGTATTATTGTGTAATCCATCAAACTAGAATCATG

Protein

Uniprot

Uniprot term	Description
Q01085	Nucleolysin TIAR OS=Homo sapiens OX=9606 GN=TIAL1 PE=1 SV=1
P70318	Nucleolysin TIAR OS=Mus musculus OX=10090 GN=Tial1 PE=1 SV=1
Q95QV8	Cytotoxic granule-associated RNA binding protein tiar-1 OS=Caenorhabditis elegans OX=6239 GN=tiar-1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050825	Family	RNA Recognition Motif and Poly(A) Binding Protein Families	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan