Gene detail

Detailed information of ENSDTNP00000019247.1 in Metridium senile

Genomic Location: not available for this species
NR annotation: XP_020892838.1, chromobox protein homolog 1 [Exaiptasia diaphana]
Species Metridium senile · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P23198	Chromobox protein homolog 3 OS=Mus musculus OX=10090 GN=Cbx3 PE=1 SV=2
Q13185	Chromobox protein homolog 3 OS=Homo sapiens OX=9606 GN=CBX3 PE=1 SV=4
Q5R6X7	Chromobox protein homolog 3 OS=Pongo abelii OX=9601 GN=CBX3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002073 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01393 all species →	Chromo_shadow	Chromo shadow domain	Domain	Interproscan
PF00385 all species →	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000953 all species →	Domain	Chromo/chromo shadow domain	Interproscan
IPR017984 all species →	Domain	Chromo domain subgroup	Interproscan
IPR008251 all species →	Domain	Chromo shadow domain	Interproscan
IPR051219 all species →	Family	Heterochromatin-associated chromo domain-containing protein	Interproscan
IPR016197 all species →	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR023780 all species →	Domain	Chromo domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22812 all species →	CHROMOBOX PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005721 all species →	Cellular Component	pericentric heterochromatin	Interproscan
GO:0006325 all species →	Biological Process	chromatin organization	Interproscan
GO:0035064 all species →	Molecular Function	methylated histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11585	CBX1, HP1B, SWI6; chromobox protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.