Gene detail

Detailed information of ENSDTNP00000019683.1 in Metridium senile

Genomic Location: not available for this species
NR annotation: XP_020903573.1, roundabout homolog 1 [Exaiptasia diaphana]
Species Metridium senile · all data for this species · gene families

Sequence

CDS

Transcript

ENSDTNT00000020484

CATAACCATGTCATTTCCGAGAAGTGAAATCGAAATTGCGTGTCTATTAATGGTTACGGTAGTTCTTAGAACAGTAGTTCATATATAGCTGTGTAATTGTCTTACTTGTCAAAATTTAGCCGTACTCTTGGGGACTGCATGATTAAACCATGTGCCGCGGTAAAATCTCGATAGCAAAATACATGACTATTGCTGCTATCGCTCTATTACCAAAACTGAGTCTGAGCTGTGACAATTACAACATGAATACAACTATTCCAGGTCCACCAGTGATGACAGAATTAAAAAGCCAAAGAACAATATACAGACGTCTATATACAGGAACATTTACATCGTTACAATGCTGTACATCAGGCAACCCGTCACCGATAGTTACATGgtacaaaaataaatacaaaatagatTTATCTAACTTCAAATTAAAACTTACGGACAATAATCAAACATTATGGATTCAATCAGTGAAATTGACCGACTCTGGGCTGTACTCATGTCAAGCAAGCAACAACTTTGGAAATCAGTCTCGACAATTTAGAGTCAGAGTCACATCATCGCTAGTCCTTCAAAAGCCAGTTGTAATACTTGAACCAAACTCATGGAGTGCTATTGTTACTAGCAATGTAACCCTTAACTGTATCGTAAAGAAAAGTATAAGAAGACCCATGATTGTATGGCATTTTAACAGCACTGCAACTCGACCACTGCATAGATATACAGGGCGACACTTAGTTAAAACAACAAAGATGGATGAAGAGGAATCATGGAACTCTAACTTGACAATATTTAATGTGACTGAATATGATGAAGGACCTTATTTCTGTGTAGCAAGGAATGGAGCTGGGTCTGGGAAAGCTGCTCAGGATTCTGGTCTACTTACTGTTATAAATGaGCCTGTAACAAGGAGTCCACTTCCACCTTATCAAGACAAGTCAACTGGGATGGATCAAAAATCTATACTTACTGTCCTTACAATAGCTTTCATTGGTTTTGTCATTCTTATCATCACAATCGTCTTCCTCTTGTGGCGTAGGAGAAAACATTCTGGTAGTTCTGCACTTGTCTTTAACCATCGCCAAACTGATAATACAAATGAGCTTGATGTGTTAATCATCCGTGATGGAACAAATCCTTGCGAGATACCTCACAAAAACCTACAGTTACTACGACAACAGGCTGGTGATACACAAtgtgattttgacgtctttatcTCCTACTCCAGCCAAGACCGTGATTTTGTGAAAAAGGTATTATTTGAAGAACTATCCACAACACATAGTGTTTGCATTGACTTCAAGGATTTTGAAATTGGTACTTTTATCGGTGATAACATCATCAATAGTATTGTCAAAAGCCGCAAGACACTGTTAGTGGTCAGTAAGAACTTCCTTGCTGGTGATTGGACATACTTTGAGATGCAGATTGCACAAGGAAGGCTTGAACAAGGCCATGATGTCTTAATTCCTGTTATTATTGAAGATATCTCATTCAATGATCTCCCCAAACCACTACAGCATTACCGCCAAACCAAGACGTACTTGGAGTATTTTAACCATGATGTTAAACCTCATTTCTGGGATCGACTAAGAAGTGCTATAGGGAAGAGTCTTATAGAAGACGAGATAATATCTGCTGTTACTAAGGACGATGCTGAGATGGATGAAACCAAGATAGACGACTCCAAGATAGACAACTCCAAGAAAGACGGCTCCAAGATAGACGACTCCAAGATAGACGACTCCAAGAAAGACGACTCCAAGAAAGACGACTCCAAGGCAGACGACTCCAAGATAGACAAATCCAAGACAGACGACTCCAAGATAGACAACTCCAAGATAGACGCCTCCAAGATAGACAACTCCAAGATAGACGCCTCCAAGATAGACAACTCCAAGATAGACGACTCCAAAATGATTGACACCAGCTGTGCTTAAGTGAATCAAGACAGGAGTTGTTATTCACTTCAATCAAACTTATTGATATCTAGCAAAGGGGGTTAAACTTGTAGCTATATCTTATGTAGATCATGTAGGATTAGGACTACTAATCCTCTACTGGTAGGGGTGCTTCTTTTCCTTGGAAATAGATGATATTTGTTAAACAGAACAAAACATTTAAAAAGGGATTgatcaaaattaaaaataaatattctatATAAGCGCTTGCTTTATCCAGGGTAGATACATGTCACCAATGGTAGAAGAGGGTAGATACATGTCTCCTATGGTAGAAGAGGGTAGATACATGTCTCCTATGGGAGAAGAGGGTAAAGTCATGTCTCCTATAGGAGAAGAGGGTAGATACATGTCTCATATGGGAGAAGAGGGTAAACTCATGTCTCCTATGGGAGAAGACGGTAAAGTCATGTCTCCTATGGGAGAAGAGGGTAAAGTCATGTCTCCTATGGGAGAAGACGGTAAAGTCATGTCTCCTATGGGAGAAGATGGTAAAGTCATGTCTCCTATGGGAGAAGAGGGTAAAGTCATTTCTCCTATGGGAGAAGAGGGTAAAGTCATTTCTCCTATGGGAGAAGAGGGTAAAGTCATGTCTCCTATGGGAGAAGAGGGTAAACTCATGTCTCCTATGGGAGAAGAGGGTAAAGTCATGTCTTCTATGGGAGAAGACGGTAAAGTCGTGTCTCCTATGGTAGAAGAGGGTAAACTCATGTCTCCAATGGGAGAAGAGGGTAAACTCATGTCTCCAATATGGGAGAAGAGGTTATATCTTCTAGATGTTTTATGGGGGAACTGGTTAAAGAAGTCATGTCTACTTTATGGGAGAAGAGGATTAAAAACGATTATCTAAAATATTACAACATATATTCTGATAGAACATATCTGTTCAAAATAACAAACATGAAGACTGATTGATATCTAAAAGCCATTGTACTACTGgttgattattatttattcaaagTAAACTGATAAAGAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0GC71	Toll-like receptor 2 OS=Capra hircus OX=9925 GN=TLR2 PE=2 SV=1
B2LT62	Toll-like receptor 2 OS=Capra ibex OX=72542 GN=TLR2 PE=3 SV=1
Q689D1	Toll-like receptor 2 OS=Canis lupus familiaris OX=9615 GN=TLR2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000113 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13676 all species →	TIR_2	TIR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR015621 all species →	Family	Interleukin-1 receptor family	Interproscan
IPR000157 all species →	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR035897 all species →	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11890 all species →	INTERLEUKIN-1 RECEPTOR FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDTNP00000019683.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.