Gene detail

Detailed information of ENSDTNP00000019979.1 in Metridium senile

Genomic Location: not available for this species
NR annotation: XP_020908805.1, E3 ubiquitin-protein ligase RNF13 [Exaiptasia diaphana]
Species abbreviation MSENI · all data for this species · gene families

Sequence

CDS

Transcript

ENSDTNT00000020780

ACTCAGACAGTTCGCCATTTTCACTGTTTTGACTCGAAAGTTGAGCAACTAGAACGATTTTACTTCTAAAAACGGCTTTAAATACACGATGTAGTCGGTTAAACCTTTTGCAAAGACAAAATAAGATAACCTATTAGTAAACAGAGATTATCGAGATGCCAAACTTTGTATTTGGAGGTGCTATTCTTGGCATATTCCTGTTTTGGACAAGTACTGCTTATGGTAGTATATACTATGAAgaatcacatcaaaataaagTCTGTGTGAATGACTCTCCATGCTACGACTATGATCTTGCACACTTTGGTGCCGTAGAAAAGTACAGAAATAAAGGTTATCTTCATCCTGCCAAGCCAGCCAATGCATGTGTGGAGATAGAACCCAATCCTTGTGGTGACATTGCATATCCATGCTTCCTGCTTGTAGAAGAAGGACATTGTTCATTTGGATATAAGGCATGGATGGCTGTGAATGCAGGATATGAATTTGTAATAATTTAtaacaataaagatgatgaacTGAAAGAAATGGGCACTGATAAATaTGGAAACAGAGTTACTGGACATATTATGGCAGTGTTTGTTGGAAAGTCTGCTGGTCTTGATCTTCTCAAGAACAATTACACTACAGGGAGTGTAATCACCATCACACCACCCCCCTTCTTCCCTAACTTGGAGTACTATCTCATCCCGTTTGTCATCATTGTTGGTATTTGTTTTATTGTCATGGCTATGTTTATGgTGATTCGCTATTATAAAGGTTACCAGGAGAAAAGAAGGAACAGAATCACTCCTGCTAACCTTAAAAAGATTCCAACTAAGAAATTCAAGAAAGGAGATAACTACTATGATGTGTGTGCTATCTGTTTAGATGAGTACAAAGATGGTGATAAACTAAGAATCCTTCCCTGTGATCATGTTTACCACTGTAAGTGTGTAGACCCATGGCTTACTGAAGGTAAAAAGACTTGTCCTGTATGTAAAAGACCTGTAGAGGGTACCCCTGAGCCTAACACACCATCAAGGAACAGACAGCAGGGGAATGATTCAGATGCAGATGAGAATACTCCACTgatacaaccatcatcatcaactcctGGCCGATCCATTGATGTTTAATATTGACAGACTGAATGATTATGAGATTCTTACGTCAGATAGAAGACACAGTGTATGTAATTCACCAATGCATAAACAAGATGCAGCCTAGGTTGTGTTTCTGTGCGACTTGCTGTACCGTAGTctcttacaaaaacttttgatgaatttttggcattattttgacattttttcatctcaatcagaccaattacagacatcaaagtttcttaaGTCTCTGCCTcttgatataaactccgcctgtcgatataaacttgaaACTGATtagtccgattgagatgaaaaaatgtcaaaataatgtcaaaaatgtatcaaaagtttttgtaagtgactaagATATGGCGATTCGCACAGTAAGGGTCTTAAAAAGAAGTTTGGGATTGTTACATGAGATGCAACAATAGCAAAATAATATTGCTGTCCATGTAATGATCCCAAGATCCTTTTGTGGAACTTGACCCACTCCAGACTGCATCTTGATTCTGCATTGACTACTTCAGTGACAATAAGACTCCAAGCAATACAATAGAACCATGTTGACAAAGAATACAATGGGTTACTATTGGAATATTTACTTGTTGTCCTTAGAGCTGTTcatattaacccgtgaaacactcttcaGAGTATTACACCTTAATTGCAtggtgttcttttgttgttatttggcCAACATACTTTGACGATTAcagtttcatgggttaatgagaacagctctaacaCCAAAAGTCAGTGTCTACAGTGATAGAGTAGCAGGGAGCTGCTAGCATTGACTTGAATCTAATTTGCATGATCAGTGAAGCAAATTAGGGTGTGTTCTATTGTATATACTTCGGCCTCCTTTGTATCCTATATACAACAGGATGAAGCAACAAGTAACTATGGCCTGGCTCAAATGTCACATCtcatgtgccaaatctaatgcaaatgaattcaaacaaaagGTTTTATCATTTGTATTAGATTCAGCACATGTGACAATTAATTTCAATTGATTTCAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q90972	E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus OX=9031 GN=RNF13 PE=1 SV=1
O54965	E3 ubiquitin-protein ligase RNF13 OS=Mus musculus OX=10090 GN=Rnf13 PE=1 SV=2
Q0VD51	E3 ubiquitin-protein ligase RNF13 OS=Bos taurus OX=9913 GN=RNF13 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005639 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan
PF02225 all species →	PA	PA domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR003137 all species →	Domain	PA domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR051653 all species →	Family	E3 ubiquitin-protein ligase and sorting receptor	Interproscan
IPR046450 all species →	Homologous_superfamily	PA domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47168 all species →	RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for ENSDTNP00000019979.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15692	RNF13, RZF; E3 ubiquitin-protein ligase RNF13	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.