Gene detail

Detailed information of ENSDTNP00000020008.1 in Metridium senile

Genomic Location: chr2:45663867...45680607
NR annotation: XP_020899650.1, uncharacterized protein LOC110238329 [Exaiptasia diaphana]
Species Metridium senile · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSDTNT00000020809

ATGAAAATCAATATGGCTGACTGGGAGGAATATTTCTCGAAACAAACTGCTCCAGCCAACTTAAAAGAAACGAAAACTGTCGTTGCTGAATTCGCTGCGACTCACAGAAACGCTGGTAGAAATGTGGTACTGATGACGtCTGGTGGCACTGCTGTTCCTTTAGAGAGTAACACAGTCAGGTTTATTGATAATTTTAGTAGTGGCACAAGAGGAGCAGCTTCAGCTGAACAGTTTCTCCAACAAGGATATGCTGTTATATTTCTGTTTAGACAGCATTCTTTGCAGCCATTTTCTAGACATATTTCTCCTGATAGTTTTCTGGACATCTTGGAGTTCAAAGGGGACAGCGAAGGATCACTTCATATAGAAGTTGATGAGTCAAGAGCACCAAATTTAcgagatgttttgaaaaaatacCATGAGGTTCAAGTGTTAGGAACACTGCTATTGGTTGAGTTTAACACTCTATCTGACTATCTGTTTCTACTGCGTACCATGGCTGAAGCACTAGGCAGCATGGGACCACAAATCATGTTTTATCTTGCTGCTGCTGTAGCTGATTTTTACATCCCTGAAGAAAACATGTGTGAGCACAAAATCCAATCAGAAAGTGGCCCCCTCCAACTGGTTATGCAACAAGTACCAAAAATGCTGTCTCCTTTAGTCAAAGAATGGGCTGAAAATGCTTTTGTAGTCTCATTCAAGCTTGAAACAGATGTAAATATCATATCAAAGAAAGCAAGAGAAGCGCTTATCAAATATAATCATCAAGTTGTGGTGTCAAATATCCTTCAAACGAGGAAAAAAACTGTGGTCATTGTCACTCCGACCCAAGAAATGGCAGTATGGATGTCCGATGAACAACTTGAACAAGGAAAAGAAATTGAAGCTAAAATCGTTACAGAACTGATCAAGATGCACCAGACGTTCATTACAGGGTCATCTTTACAAGGTACACAAGGCAACTTAATTACTGGTCAGTTAACGGAAAATATCCCCCTACCACAGCTTAATACATTCCAGTATGGAATACAACCACCTCAACCACCACTTACACCTCAAGACGCATGCTCACCAAGTTATGTTAACTACAGCCCTGCTACACCTCCCGCAAGTGTAAATCACATTCGATTATTTTCACCGATACCTGATGGAGGTATACCCCCTACCCCACCAACGCCCAACTCAGGGGGTAAAGGGGGACGGTTTGGGATCTTATCTGACATGTCACTCACACCAGAAATGAAAGAGTTTATCGAGTCATTTCGTACAAGGAGAATTGCACTTGGTTATACACAAGAAGATGTAGGCTTTGAATTATCACGTACTAACGGCCCTTCGTACAGTCAGTCGTTTATTTCACGATTTGAGTCGAAAAATCTCGGCCTTAAAGCCGCTGAAAAGATGAAACCAGTCATGCAGTCATGGCTGGAACAAAAGGAACTAGAAAACGCCAAAGGCTTACGAGTATGCAAGAAACGGAAGCGGCGAACATCGTTTTCTAACGAGGTACTACGCATGCTTATTAATCAATTCGAGCGAAATCCAAAGCCAAGCTCAGCTGATATTGCTCAGATTGCAAAGGAGGTCGATCTCGAACCAGTTACGATACGAGTATGGTTTTGTAATCGTAAACAAATGCTCAAGAGAATGGCCACTGGCAAGGTCCGTGTTAACAATTCCCTAAAGGCTGAATTAGAAGCTAAATACAAAGTCCCTAGTCCAAGCAAAGATTCGAAGTTTGACTTTACTCATATGCCTGTTGGACAATTCTCGTTTACTGAGGATAGAGTAAAGCCACTTGTTTGTGTTGCATCTGAAGGAAGTCCCGTCAAAAACACTCCACGTACATCGTCCGTTACGTATGCACAAGTACAGGACGATACGATCGTGCACGCAACGGCTCCTGGATTTACTGTTACTGAACCTAGTGGACAACATATCAACCAATTGTCATTCTCTGAAGGAGTAAAAACCACGGCTTCTGGATTTACTGTCACAGAACCTAGTAAACATATAAACCAATTGTCATTCTCTGACGGAGTGAAAACAGTTGGTTTAAGTCCGAATAAAACTACTGGAGATACTTCCAACCACGTGACATTCCCGACTGATTCTTTGACGGGAACACACGTGGAACACTCTCCTGTTGCCAGTTTAAACTTTGATTCCTCTGCAGTTCAAAAACATTTGCAGTATGTACAAGGTGTGGACGAAAATACTATCCATGAATACCAATCGGATGTAGCAATGCCTGAACActcgtga

Transcript

ENSDTNT00000020809

CACATTAACATCTGTTGTGAAATTCGCTTGATTTTTGCaagagaaaaatattttatttcttatttacatTAATCTTTTTAAGTGGCTTGTTCAAGGAAGCCATTGCACGTATTCTAAAcgatatttttagatttttagcACACTTCGCATACGTAATGAGCAGATAATTCATGAAAATCAATATGGCTGACTGGGAGGAATATTTCTCGAAACAAACTGCTCCAGCCAACTTAAAAGAAACGAAAACTGTCGTTGCTGAATTCGCTGCGACTCACAGAAACGCTGGTAGAAATGTGGTACTGATGACGtCTGGTGGCACTGCTGTTCCTTTAGAGAGTAACACAGTCAGGTTTATTGATAATTTTAGTAGTGGCACAAGAGGAGCAGCTTCAGCTGAACAGTTTCTCCAACAAGGATATGCTGTTATATTTCTGTTTAGACAGCATTCTTTGCAGCCATTTTCTAGACATATTTCTCCTGATAGTTTTCTGGACATCTTGGAGTTCAAAGGGGACAGCGAAGGATCACTTCATATAGAAGTTGATGAGTCAAGAGCACCAAATTTAcgagatgttttgaaaaaatacCATGAGGTTCAAGTGTTAGGAACACTGCTATTGGTTGAGTTTAACACTCTATCTGACTATCTGTTTCTACTGCGTACCATGGCTGAAGCACTAGGCAGCATGGGACCACAAATCATGTTTTATCTTGCTGCTGCTGTAGCTGATTTTTACATCCCTGAAGAAAACATGTGTGAGCACAAAATCCAATCAGAAAGTGGCCCCCTCCAACTGGTTATGCAACAAGTACCAAAAATGCTGTCTCCTTTAGTCAAAGAATGGGCTGAAAATGCTTTTGTAGTCTCATTCAAGCTTGAAACAGATGTAAATATCATATCAAAGAAAGCAAGAGAAGCGCTTATCAAATATAATCATCAAGTTGTGGTGTCAAATATCCTTCAAACGAGGAAAAAAACTGTGGTCATTGTCACTCCGACCCAAGAAATGGCAGTATGGATGTCCGATGAACAACTTGAACAAGGAAAAGAAATTGAAGCTAAAATCGTTACAGAACTGATCAAGATGCACCAGACGTTCATTACAGGGTCATCTTTACAAGGTACACAAGGCAACTTAATTACTGGTCAGTTAACGGAAAATATCCCCCTACCACAGCTTAATACATTCCAGTATGGAATACAACCACCTCAACCACCACTTACACCTCAAGACGCATGCTCACCAAGTTATGTTAACTACAGCCCTGCTACACCTCCCGCAAGTGTAAATCACATTCGATTATTTTCACCGATACCTGATGGAGGTATACCCCCTACCCCACCAACGCCCAACTCAGGGGGTAAAGGGGGACGGTTTGGGATCTTATCTGACATGTCACTCACACCAGAAATGAAAGAGTTTATCGAGTCATTTCGTACAAGGAGAATTGCACTTGGTTATACACAAGAAGATGTAGGCTTTGAATTATCACGTACTAACGGCCCTTCGTACAGTCAGTCGTTTATTTCACGATTTGAGTCGAAAAATCTCGGCCTTAAAGCCGCTGAAAAGATGAAACCAGTCATGCAGTCATGGCTGGAACAAAAGGAACTAGAAAACGCCAAAGGCTTACGAGTATGCAAGAAACGGAAGCGGCGAACATCGTTTTCTAACGAGGTACTACGCATGCTTATTAATCAATTCGAGCGAAATCCAAAGCCAAGCTCAGCTGATATTGCTCAGATTGCAAAGGAGGTCGATCTCGAACCAGTTACGATACGAGTATGGTTTTGTAATCGTAAACAAATGCTCAAGAGAATGGCCACTGGCAAGGTCCGTGTTAACAATTCCCTAAAGGCTGAATTAGAAGCTAAATACAAAGTCCCTAGTCCAAGCAAAGATTCGAAGTTTGACTTTACTCATATGCCTGTTGGACAATTCTCGTTTACTGAGGATAGAGTAAAGCCACTTGTTTGTGTTGCATCTGAAGGAAGTCCCGTCAAAAACACTCCACGTACATCGTCCGTTACGTATGCACAAGTACAGGACGATACGATCGTGCACGCAACGGCTCCTGGATTTACTGTTACTGAACCTAGTGGACAACATATCAACCAATTGTCATTCTCTGAAGGAGTAAAAACCACGGCTTCTGGATTTACTGTCACAGAACCTAGTAAACATATAAACCAATTGTCATTCTCTGACGGAGTGAAAACAGTTGGTTTAAGTCCGAATAAAACTACTGGAGATACTTCCAACCACGTGACATTCCCGACTGATTCTTTGACGGGAACACACGTGGAACACTCTCCTGTTGCCAGTTTAAACTTTGATTCCTCTGCAGTTCAAAAACATTTGCAGTATGTACAAGGTGTGGACGAAAATACTATCCATGAATACCAATCGGATGTAGCAATGCCTGAACActcgtgaaaaaaaaaaacccagaaacTATTAAGAAATCacaaaatgaaatcaatatgCATAATGTGCAATATGTAAAAAAGTATCCAGTATAAAACTCTCTGAATAGCTGGGTCATCAAAATGTGCATCATTTTATGGAAACAACCAAGCATGAAAACTTACAAACATTCAAGATGTCAATATTGGGGATAGACACATGGGGAACAGAAATTTTATTGGTTGTGTTGTATAAACAATCCCAATTGACTATTTAGTGAATTCAGCTACGATACTTAAAGATAAAGAATGCAACCAAATGGTAATCGTTATCTCATAGAGGCATCGAGCATTATTTTAGAGCTATAAGCCTTACTTGGAGTATTCGATCGATACAACCGATAATTGACGAAGATCGATCGGAAATCGATACAATATCGACATCGATAGTTCAAGAAGATATAAGAGTACAAGATTAAGATTCGATAAGTCTCCTGTAAGTCGTCGACAATAATCGATATACATCCAATTCTTCTTGTTTTTTATTGGTCGACCCATGGCAGGTATCCATTGGTCGATTCTATGGTTTGTATTGTTAGTGTTTATGatatagtatacacctattgcaaacatcgttgtcacagccgaagccacagtccacactctgaagcctgcaatggatgtcggtaatatgaacataaactGTTAATGGGCACAAGTTTTCTAAAGCAAAAAATTGTTTcaccatctaccactgcaacaagttgttatggtcatatagcacaaacacttGCAGCCAAAATGTGttttgaataaatcgataacaagagaagaaataccgacatcctttgcgtacttcagagtgtggactgtagctttttTTTGCGACAAAGATTACTGAAATGGGTGTATGTAGTGTAGTGTTACTGTAGTATATGTAGTGTAGTGTTACTGTAGTATATGTAGTGTAGTGTTTGTACTGTAATTATATAGCACTTACAGTATGGTTAATCATGTTtaaaaaataatg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9HAB8	Phosphopantothenate--cysteine ligase OS=Homo sapiens OX=9606 GN=PPCS PE=1 SV=2
Q8VDG5	Phosphopantothenate--cysteine ligase OS=Mus musculus OX=10090 GN=Ppcs PE=1 SV=1
Q0J7N5	Phosphopantothenate--cysteine ligase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0176100 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006300 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan
PF04127 all species →	DFP	DNA / pantothenate metabolism flavoprotein	Family	Interproscan
PF00157 all species →	Pou	Pou domain - N-terminal to homeobox domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR035929 all species →	Homologous_superfamily	CoaB-like superfamily	Interproscan
IPR013847 all species →	Domain	POU domain	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR000327 all species →	Domain	POU-specific domain	Interproscan
IPR007085 all species →	Domain	DNA/pantothenate metabolism flavoprotein, C-terminal	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR010982 all species →	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR050255 all species →	Family	POU domain transcription factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11636 all species →	POU DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDTNP00000020008.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.