Gene detail

Detailed information of ENSDTNP00000023901.1 in Metridium senile

Genomic Location: not available for this species
NR annotation: QBK87004.1, MAG: ubiquitin [Marseillevirus LCMAC103]
Species Metridium senile · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P19848	Ubiquitin OS=Coprinellus congregatus OX=5347 PE=1 SV=1
P0C224	Ubiquitin-ribosomal protein eL40 fusion protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=crp-79 PE=1 SV=2
P33190	Ubiquitin-ribosomal protein eL40 fusion protein OS=Tetrahymena pyriformis OX=5908 GN=TUF11 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000498 (this species only)
Ubiquitin family	ULD\|UBL\|NEDD8 · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR019954 all species →	Conserved_site	Ubiquitin conserved site	Interproscan
IPR050158 all species →	Family	Ubiquitin and ubiquitin-like	Interproscan
IPR019956 all species →	Domain	Ubiquitin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10666 all species →	UBIQUITIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019941 all species →	Biological Process	modification-dependent protein catabolic process	Interproscan
GO:0030162 all species →	Biological Process	regulation of proteolysis	Interproscan
GO:0031386 all species →	Molecular Function	protein tag activity	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0045116 all species →	Biological Process	protein neddylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02927	RP-L40e, RPL40, UBA52; ubiquitin-large subunit ribosomal protein L40e	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.