Gene detail

Detailed information of ENSDTNP00000024469.1 in Metridium senile

Genomic Location: chr5:1930143...1977798
NR annotation: XP_020901378.1, ankyrin repeat and fibronectin type-III domain-containing protein 1 isoform X2 [Exaiptasia diaphana]
Species Metridium senile · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSDTNT00000025615

ATGGCTGGAAAACCTCAATCAACTACAGAATTTCTCGAAAGTGTCTCGGAGGATAGCTCAAGCACTCAAGAGTTGGATGAGCTCTTTGGGTCGTCGAAGTTAGCTCTCTTGCAAAAACCTTCTGCTAGCAACAAATCCATGGAACAGAATTCAAAAACTAAACCGATCAGCGAAAAAGATGTAGTTTTGGATATCCAAGATGACGGGAGAGAGAAACCACATCCTTTACGTAGTCCTGTCCGATCTCGTCCCCCTCTGTTACGTGCTTTCACCATTTCGTCAATTCCTGTAGAAGGATCGCAGCCCCACGTCAAGAACGGAAAGCACATGTTAAAGGCTCCACTCAAACTAAAGTTTTCTCTATCAACTAAAAGTTCAGCGTGGCGTCTAGAGGATGACACAGAGTCGGAGCGTCCAATCCATAACTATCTTGATGAAGTCCCCTTTGGGTATACCCCAGGTGGATTGTATTTTATGAATAGCAATGGAACAGGGACAATTACCAGAAAAATATCGGCAAGACTTGTGAATGGCTCAAACACAGATGCTGAATCTTCTAAACACAGTAGTTCAAGTGAAGGCTCAGATTTATCGATAAATACACGAAAGACAAGTGGAATTGTGAAATTAGCTCGAAAACTTAGTCAAAGGAGAGAACGAAAGACTCAATCGACACCCGAAAGATTACCTGGTCGTTCCCAGAGCCTTGAAAATATCCCCTCGCCAACCGACGGCCCGCAAGGGAGTGGTAACAACAATATTGGTTCTGTCAAGTCGCCTGGTTTGTATAGGACAATGTCATTAAATCATCGACCTTCACCAAGACCTCGTCTGACCTCCATAGAAAATCGTTATAGTGCAGGTAATAGAGAAAACCGTTATAGTGGAAGTAATAGAGATTTAAAAGATAagacaagaaaaagaaaggaaaataatATCGATGCCTTAATCGACTCGGTTGTCTGTCAAGACATTGATGACGTCAGAACAATACTAGAAACAGAAGATGTTGACGTCAATAAGTTAAATTCAGAAGGATTTTCGCCGTTGGATTTCGCTGTTTTACTTGGTTTCTACGACATTGCTAAATTACTACAGGCCTATGGCGCACAGGAAAGTCCTCGATtacAAAGCAGTTTCTTTGAGAAACACCTTAAAATGCTGATAACTGAGGCAGAACATAAAGTAGAGGACCTTACTCTATCTGTCGTACATGCAACTAATAGTAACAATTCTGAAATTAAGGAAACCGAGCGGCTACTAAAGGAATGGGAATGGACTCGACTCATTCTTAGAAGAATGCTAATTGGTTTAAATAATTGTGATCCTCCTGGTCAACCAGTCAGCGTTACGTTATCTGTTGCGTCAGAAGACTCGTTACTAGTTCGATTCACAGAACCTATCCAAAACGATACTATATTTACCAAGTATAAAATTCAGTGGAGTCGCAGTGAAAACTTTATTCCTTTGGAAGGAGATTATGTCTTAACTGATATTAGAAATCTAGAATATACAATACCGAATCTTCAAAAGtcCGTTTCGTATTTtgttcgggtttcctgtggaaaTCTTAAAGGGTTTGGTAGTTGGCTTGGATCCACTCCTTCCTCGTCCATGCCATCAAGTTGGCATGAGGTGGATGACTCCAAGCCTCGTTTTCAAGGTAGACTAAGTATCATCGATGATTTATTCAGTCGTGTTTGGATGAGTCACGATAGGCTACCCTCTCACCATGGCAACGACAGTAAACGACCACGTAGTGGAAACTATGACAGCAACATCCATGTAAACGATGGATCGATGTCACCGAAGTCAAGCAGGAAAGAATCAGTGAAGAAGAGTTTATCGAAAtacacaaatatattttttcaatcaaCACcgaaatttgtcaaaaatatgaAGAGGGGGGTATACTTGGCAGCTATTGTGTACACCAGTGACGACCGTGTGCTAGTAACGTTTGATGACAATATTCCAACCATTGAAATCGACGATAATTACCCACCGACATTCCTACAGGACTTCTGCTGGCTTATGAAGATCGCCTGTACGTGGAAAGACGTGAAGAAAATCAAGCAAGAAGTAGAAAAGAATCCTGCATCGACGTCGGTCCTGTTTAGATGTAAACTACTTAACGCTGTGGATGCTTTTCAGACTGCTCTTGGTAAGCAAAACCTTGGTCAGTTACATTACAAGGCTGTCAAGGATCGTAATGGAAGCACAGTCATAGTGACAGTCAACTGTTTAAATCATGCGAGTACATTTCGTCCGAGGATAATGGCTTTGAAGTGGACGTCGTTGAATAAGCTTCTAAAGAAAGCAAGTTTCACACCGAATCTTCCCGCTGATCTTTGCTATGCGTCTGATATGCTGATTACAAGCATAAAGGAAAAAGTGGAGTATTTCCAGCAGAGTAGTAAACCACTCGAGAGGGGGATGTACATTGGATACCTCAAGCTTCGTACGTTTGTGGATGCTATCCATGTAGTGGTCGACGAAAACTGTCCCAACGTCCTTCCACACGTGAAAATACGTGACAACCCTAACGTTTCAAGAGAAGAATGGCAGTGGTTACAGAGCATGGATACTTTAGGGGAACGTACGTACGAACCGACCAAGACAGCACACGACTTTCAACTACTTGTCGCTCGAGCTGCAGAGATTGTAATGGAAGAAGTTGGTGTTAGCAAAGAGGCATCAAAGCTTCATCGTATCTACGATCGTGAGGTGGTGGAGCTGGACGAGAACGTCTCGTTCCTGATCGTTTTCCCGCCACCAGAAGACGTGTGCAGTGCGCCAGGACAAGTTGATAGTCTGACACACAGAAAGAAATATATCTCACTGCCAGTTCAGACATTTGAGATGATTCATATGTGTACTTATCAATCAGACTTCATATCCCACTACTCACGCCTGTCGTCTGTCTTGGATATGGACTCAGTGCTTGCACAGCAATCCTTACGAGAGGCATTCTCATCAGGTGAATTAGAAAAAGCCAAACAAAGACAAGTACAACTTATGGAATTTCAGAGGGAGCTGGATGAGACGTGGAAAGGCATGCGGTGGATTCTGGATGCTTTACACTATGCACGTGATCGACAAGTTCGTGGTGGAATACCGCTGGTCGAAGTGTTCAAGTTCTCACCTTGTCATATGAGAAAAACTGGATCATTGGATGAAGAATCAGCTGTGCATAAAACCACTAACAACATCAAGTGA

Transcript

ENSDTNT00000025615

TATTTATTCTGGTTCAACATTTCCAAGTTGCGTCTTCGATGGTTTTTCTATGCAGTCAACGAGGAAAGATGTCTTGAATTTTTGTCGTTAGTACGAGTTTAATCCCTAAAAGAGCTATGAGTAAAGGTTGTTGTGTCCTTCGCAATTGCATTCAATGGCTTGTTGCAGCTGTTTGCCGTACTGTAGTTGAGTCCTAAAGTAATTCAAAATAACTGAATATTCACGATTTCTTCATTTTCTGGAACGCGTTTACAAAGTCCTTTGTTGCGAAGAAAGGATTTTAAAGCTTTCGGTTTCAAATGGCTGGAAAACCTCAATCAACTACAGAATTTCTCGAAAGTGTCTCGGAGGATAGCTCAAGCACTCAAGAGTTGGATGAGCTCTTTGGGTCGTCGAAGTTAGCTCTCTTGCAAAAACCTTCTGCTAGCAACAAATCCATGGAACAGAATTCAAAAACTAAACCGATCAGCGAAAAAGATGTAGTTTTGGATATCCAAGATGACGGGAGAGAGAAACCACATCCTTTACGTAGTCCTGTCCGATCTCGTCCCCCTCTGTTACGTGCTTTCACCATTTCGTCAATTCCTGTAGAAGGATCGCAGCCCCACGTCAAGAACGGAAAGCACATGTTAAAGGCTCCACTCAAACTAAAGTTTTCTCTATCAACTAAAAGTTCAGCGTGGCGTCTAGAGGATGACACAGAGTCGGAGCGTCCAATCCATAACTATCTTGATGAAGTCCCCTTTGGGTATACCCCAGGTGGATTGTATTTTATGAATAGCAATGGAACAGGGACAATTACCAGAAAAATATCGGCAAGACTTGTGAATGGCTCAAACACAGATGCTGAATCTTCTAAACACAGTAGTTCAAGTGAAGGCTCAGATTTATCGATAAATACACGAAAGACAAGTGGAATTGTGAAATTAGCTCGAAAACTTAGTCAAAGGAGAGAACGAAAGACTCAATCGACACCCGAAAGATTACCTGGTCGTTCCCAGAGCCTTGAAAATATCCCCTCGCCAACCGACGGCCCGCAAGGGAGTGGTAACAACAATATTGGTTCTGTCAAGTCGCCTGGTTTGTATAGGACAATGTCATTAAATCATCGACCTTCACCAAGACCTCGTCTGACCTCCATAGAAAATCGTTATAGTGCAGGTAATAGAGAAAACCGTTATAGTGGAAGTAATAGAGATTTAAAAGATAagacaagaaaaagaaaggaaaataatATCGATGCCTTAATCGACTCGGTTGTCTGTCAAGACATTGATGACGTCAGAACAATACTAGAAACAGAAGATGTTGACGTCAATAAGTTAAATTCAGAAGGATTTTCGCCGTTGGATTTCGCTGTTTTACTTGGTTTCTACGACATTGCTAAATTACTACAGGCCTATGGCGCACAGGAAAGTCCTCGATtacAAAGCAGTTTCTTTGAGAAACACCTTAAAATGCTGATAACTGAGGCAGAACATAAAGTAGAGGACCTTACTCTATCTGTCGTACATGCAACTAATAGTAACAATTCTGAAATTAAGGAAACCGAGCGGCTACTAAAGGAATGGGAATGGACTCGACTCATTCTTAGAAGAATGCTAATTGGTTTAAATAATTGTGATCCTCCTGGTCAACCAGTCAGCGTTACGTTATCTGTTGCGTCAGAAGACTCGTTACTAGTTCGATTCACAGAACCTATCCAAAACGATACTATATTTACCAAGTATAAAATTCAGTGGAGTCGCAGTGAAAACTTTATTCCTTTGGAAGGAGATTATGTCTTAACTGATATTAGAAATCTAGAATATACAATACCGAATCTTCAAAAGtcCGTTTCGTATTTtgttcgggtttcctgtggaaaTCTTAAAGGGTTTGGTAGTTGGCTTGGATCCACTCCTTCCTCGTCCATGCCATCAAGTTGGCATGAGGTGGATGACTCCAAGCCTCGTTTTCAAGGTAGACTAAGTATCATCGATGATTTATTCAGTCGTGTTTGGATGAGTCACGATAGGCTACCCTCTCACCATGGCAACGACAGTAAACGACCACGTAGTGGAAACTATGACAGCAACATCCATGTAAACGATGGATCGATGTCACCGAAGTCAAGCAGGAAAGAATCAGTGAAGAAGAGTTTATCGAAAtacacaaatatattttttcaatcaaCACcgaaatttgtcaaaaatatgaAGAGGGGGGTATACTTGGCAGCTATTGTGTACACCAGTGACGACCGTGTGCTAGTAACGTTTGATGACAATATTCCAACCATTGAAATCGACGATAATTACCCACCGACATTCCTACAGGACTTCTGCTGGCTTATGAAGATCGCCTGTACGTGGAAAGACGTGAAGAAAATCAAGCAAGAAGTAGAAAAGAATCCTGCATCGACGTCGGTCCTGTTTAGATGTAAACTACTTAACGCTGTGGATGCTTTTCAGACTGCTCTTGGTAAGCAAAACCTTGGTCAGTTACATTACAAGGCTGTCAAGGATCGTAATGGAAGCACAGTCATAGTGACAGTCAACTGTTTAAATCATGCGAGTACATTTCGTCCGAGGATAATGGCTTTGAAGTGGACGTCGTTGAATAAGCTTCTAAAGAAAGCAAGTTTCACACCGAATCTTCCCGCTGATCTTTGCTATGCGTCTGATATGCTGATTACAAGCATAAAGGAAAAAGTGGAGTATTTCCAGCAGAGTAGTAAACCACTCGAGAGGGGGATGTACATTGGATACCTCAAGCTTCGTACGTTTGTGGATGCTATCCATGTAGTGGTCGACGAAAACTGTCCCAACGTCCTTCCACACGTGAAAATACGTGACAACCCTAACGTTTCAAGAGAAGAATGGCAGTGGTTACAGAGCATGGATACTTTAGGGGAACGTACGTACGAACCGACCAAGACAGCACACGACTTTCAACTACTTGTCGCTCGAGCTGCAGAGATTGTAATGGAAGAAGTTGGTGTTAGCAAAGAGGCATCAAAGCTTCATCGTATCTACGATCGTGAGGTGGTGGAGCTGGACGAGAACGTCTCGTTCCTGATCGTTTTCCCGCCACCAGAAGACGTGTGCAGTGCGCCAGGACAAGTTGATAGTCTGACACACAGAAAGAAATATATCTCACTGCCAGTTCAGACATTTGAGATGATTCATATGTGTACTTATCAATCAGACTTCATATCCCACTACTCACGCCTGTCGTCTGTCTTGGATATGGACTCAGTGCTTGCACAGCAATCCTTACGAGAGGCATTCTCATCAGGTGAATTAGAAAAAGCCAAACAAAGACAAGTACAACTTATGGAATTTCAGAGGGAGCTGGATGAGACGTGGAAAGGCATGCGGTGGATTCTGGATGCTTTACACTATGCACGTGATCGACAAGTTCGTGGTGGAATACCGCTGGTCGAAGTGTTCAAGTTCTCACCTTGTCATATGAGAAAAACTGGATCATTGGATGAAGAATCAGCTGTGCATAAAACCACTAACAACATCAAGTGAAGTCGTTGCCATGGTAATACGACAACTTGAGAGAACCTGCGacgaaagaaaaacaatatgtCAAAGTATACGAGAAGAAGACTACAAAAACTACTGCCTCGTTGCTGTTGTTGGCTCACAGGAAAAATGCTTCAACGATGATCTAAAGCCGCTTGAGCTTCAAAACCCTTGGAAAAGAGGAAAGTTATACGTTAGGTTAAAAACCTCAGCAATGGCTGCTACTAATTTTGGTCAGTTTACAAGTGTTTGATGTTAAAAGCACCTGTTGATAGGGGCCTGGGCACTAAATGAGTATTGCATATACACCTCATGTCCATATATGGATATGATTTGTGTAAATATAAAAATCTCTCCCCATGTCCTCCTCTCACTGGTTGTTAtggaaaatttttttttaagaaacgCAAAAAGTAATCTTTCGTACCAATCCCTCTATTTCATATCTACTCGTAGAATAGAAATGTTGCTACGAGCTTTTGTTTCTGACTAACTCGCCTCGACCTCACATTAAACATAATGcaattttcacatgtatgagaggctagtcagtacAGAAACTTCGTATTCATTCCTATTAATAGTTCGTGACTAAAGAAAAACTACACAACCTGATTGCCTCGTTGCTGACCATATATGGTTTTGACTTGAATATGCGACTCACATTAGTGCCCATGCCCCTGGAGTTTTATTTAAAAGAGATTTCTATTTCATTACATATATTTCTATCTTCACAATAATAAAAGGATCAAATAACCAAATATATCTGTGTATATACGAAGTAATGAATGTCAAGCCAATTTGACTTTATTGAATAATTTAGATCTTATTATAAAGGAAAAGATCAAGAAATCATGTGATATTAATCATGGTTTTATCagtttttcaaaaatgtttgaattatatataaatgtctaTAATCACGATAAGTAAGATTGCGTGACACTAATGAAAATGTAGAGATgaagtaatatattttaaacTGTTGAGATTGCGTGACGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N957	Ankyrin repeat and fibronectin type-III domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ANKFN1 PE=1 SV=3
A0A571BF63	Ankyrin-repeat and fibronectin type III domain-containing 1 OS=Mus musculus OX=10090 GN=Ankfn1 PE=1 SV=1
A0A8M9QN10	Ankyrin repeat and fibronectin type-III domain-containing protein 1 OS=Danio rerio OX=7955 GN=ankfn1 PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002462 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for ENSDTNP00000024469.1 in Metridium senile.

InterPro

InterPro term	Type	Description	Source
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR039269 all species →	Family	Ankyrin repeat and fibronectin type-III domain-containing protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21437 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000132 all species →	Biological Process	establishment of mitotic spindle orientation	Interproscan
GO:0005819 all species →	Cellular Component	spindle	Interproscan
GO:0061172 all species →	Biological Process	regulation of establishment of bipolar cell polarity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDTNP00000024469.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Metridium senile tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Metridium senile, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →