Gene detail

Detailed information of ENSDTNP00000026981.1 in Metridium senile

Genomic Location: not available for this species
NR annotation: QBK86670.1, MAG: DEAD/SNF2-like helicase [Marseillevirus LCMAC102]
Species Metridium senile · all data for this species · gene families

Sequence

CDS

ENSDTNT00000028268

TTGGAGAAACCTTTGGAGAAACCTTTGGAGAAACCTTTGGAGAAACCTTTGGAGAAACCTTTGGAGAAACCTTTGGAGAAACCTTTGGAGAAACCTTTGGAGAAACTTTTGGAGAAACTTTTGGAGAAGGTTTCTCACCCGAATTTATTAAATTTAACAGTGCTTGGCGAAGTTCGGCGACAGCCGTCGGAAAACGATACCGACTCTAGTCGCCAAGCCTACTTGGCGACGGTGAACGAGAATTTGGCCGCGAAGGTCGTTTCAAACAGCCCTCTCACACAACAAGACTTGGCTGCTGGAGAATTTACCGCTATCCTCAGATTGGCGGGAGTGCGAAGCTGCGACGGATGCTTGATGTTTCCTAACGTGGCTTCCGCACTTTACAACTCTACGGGTTGGCGCGGTTTGCCGATTAACCTCGGTATTACTTCGAGTACTGGCGAGTTCACACCCATTACACTTCAACAGCACCAAATAGAAGGACTTAATTTTATTCGAAGGCGCGAAAAAATGTCCGGGGGTTGTTACTCTTACGGTCTGCGTGGTTCTATCGCGCAGCTCGAAATGGGTTTGGGTAAAACATTGCTAGCAATAGCGTATAGTTTAATAGCTCCTCGCCCCCCTCATCCCGAACGATTTGGAGAGAATGGGTTTCCAACTCTTGTAATTGCCTCCAAAACCGTTATGTTAGAGTGGAAGGCTGAAGGTTTTGAAAAGTTCTTTGGAAGTAACGTAAAAGTTCTTTACTACCACAAGACTTTTATACCCAATGCCTTCTTTAACAACATATGTCGTGAAGACATTGTTGGGTACGACTTTGTAATTACAACTTACGACGTCGTCTCCGCGGCTGGCAAAAAGGGTAGCGAGGTTGAAGAGTGCTTTGAACGTGGCGAAGAACACACGCTTATGAGCGGCAAAATAGTGGCTATCCACTGCCGAACGCGCGAGCAGGCAAATAAACCAGCAATTCGCGGTCCCAGAATTCTATTTAACACTCCATGGGAGCGTGTTATAGCTGATGAGTCCCAGCGCTTTACAAACCCGACCAGCCTTATTTACAAATCAATGATGGCTGTTTACGGGCTCTACAAGCTGTGCCTCACTGGAACGCCAATTAAAAACTATCGCACTGACATTTGGTCGCAGCTACGGTGGTGTGGATATACAGGGTGTGTAAATAAGACTGACTGGAAGCGCAAAGGGTCTTCTTTAATGAATACTCACAAGCTCACAGGTGCCGTTCTTCAAGTCTTAACTGAAGCCACTGATATCGTTTTACCAGAGAATTTTAAGGTGTATACCACCGTTCGGTTAACCGGTATAGAGAGACAGGCTTACGACTTCGTTTTGGGCACGGCTAAGCGCGTCTACGACCAGATGATGGCAAAGATGGTGAACTTTGCGCATGTATTGGCTATTTTTATAAGGCTGCGCCAAATGTGCATCGCTCCATACCTTATTACCCAAGAAGCTAAGCGCAACCGATCTTCAAAAAAGAGCGGTGACACGCTGGCCAACGAATACCTCAAACAACTACACACAGGCCCTTTATCCAAATGGGTCAAGGACAAGTCGGGTACTGCGGGTATTAGATCTGCTAAAATGCAGGAAATTATTGCAGTAATGAAAAAGATTCCTAAAGGAGAGAAAGTCGTTGTGTTTTCTTCGTTTACTAGCGGTCTCGACTTATTAAACGACGCAATTGCCGAGTTTATGCCTGAAGGTTACCAATACGACCAAATCGACGGCGATACACCGTCTGTTATGCGTAAAAGGATTAAAGACAGTTTTTGCAACGACGACAAAGTTTCAGCGCTCTTATTGACTTACAGCGTGGGTAGCGTTGGTTTGAACTTAACTCGTGGCAACCACGTTATCTGCATCGAGCCTTGGTGGACAGATACTACTCTTGAGCAAGCTGCAAAACGCTGCCACCGACCTGGACAAACGCGCGATGTTTACACCTACAACATCTACGTCGAGAACTCGATCGAACAGCGTATCCTTAAAATATGCGAAGAAAAGAGGGAAATGGCTAAAGAACTCCTTAACGGCGCCGTTTGTGCGAGAAGGGGTGGCCCCGATAAATACACACTCGGGCGTATCCTTAACATTTACAACTAA

Transcript

ENSDTNT00000028268

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O55764	Putative helicase 172L OS=Invertebrate iridescent virus 6 OX=176652 GN=IIV6-172L PE=3 SV=1
P94593	Putative ATP-dependent helicase/translocase YwqA OS=Bacillus subtilis (strain 168) OX=224308 GN=ywqA PE=1 SV=2
Q6C2R8	DNA repair protein RAD5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=RAD5 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0052644 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050628 all species →	Family	SNF2/RAD54 Helicase and Transcription Factor	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45626 all species →	TRANSCRIPTION TERMINATION FACTOR 2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0008094 all species →	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDTNP00000026981.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.