Genomic Location: chr3:16351392...16374736
NR annotation: XP_020906650.1, argininosuccinate synthase [Exaiptasia diaphana]
Species Metridium senile · all data for this species · gene families
| CDS |
| ENSDTNT00000028613 |
| Transcript |
| ENSDTNT00000028613 |
| Protein |
| ENSDTNP00000027320.1 |
| UniProt accession | Description |
|---|---|
| Q66I24 | Argininosuccinate synthase OS=Danio rerio OX=7955 GN=ass1 PE=2 SV=1 |
| P09034 | Argininosuccinate synthase OS=Rattus norvegicus OX=10116 GN=Ass1 PE=1 SV=1 |
| P16460 | Argininosuccinate synthase OS=Mus musculus OX=10090 GN=Ass1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004040 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF20979 all species → | Arginosuc_syn_C | Arginosuccinate synthase C-terminal domain | Domain | Interproscan |
| PF00764 all species → | Arginosuc_synth | Arginosuccinate synthase N-terminal HUP domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR023434 all species → | Family | Argininosuccinate synthase, type 1 subfamily | Interproscan |
| IPR018223 all species → | Conserved_site | Argininosuccinate synthase, conserved site | Interproscan |
| IPR024074 all species → | Homologous_superfamily | Argininosuccinate synthetase, catalytic/multimerisation domain body | Interproscan |
| IPR048268 all species → | Domain | Arginosuccinate synthase C-terminal domain | Interproscan |
| IPR048267 all species → | Domain | Arginosuccinate synthase-like, N-terminal domain | Interproscan |
| IPR014729 all species → | Homologous_superfamily | Rossmann-like alpha/beta/alpha sandwich fold | Interproscan |
| IPR001518 all species → | Family | Argininosuccinate synthase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11587 all species → | ARGININOSUCCINATE SYNTHASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004055 all species → | Molecular Function | argininosuccinate synthase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006526 all species → | Biological Process | L-arginine biosynthetic process | Interproscan |
| GO:0000050 all species → | Biological Process | urea cycle | Interproscan |
| GO:0000053 all species → | Biological Process | argininosuccinate metabolic process | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01940 | argG, ASS1; argininosuccinate synthase | EC:6.3.4.5 | Exosome | ko04147 | deepkoala |
Genes whose expression across the transcriptome samples of Metridium senile tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Metridium senile, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
