Gene detail

Detailed information of ENSDTNP00000028014.1 in Metridium senile

Genomic Location: not available for this species
NR annotation: XP_031567155.1, probable E3 ubiquitin ligase complex SCF subunit sconB [Actinia tenebrosa]
Species Metridium senile · all data for this species · gene families

Sequence

CDS

ENSDTNT00000029307

ATGTTACAGGAAGCCCGTTGCCTAATCGTGAATGGAGGTCGTATCATAGCAACGCTCGAAGGAATACAAAAAGTCAAGATGGCGGCCCGCGATGCTCATTTTAGCGGGTCCAAAACACTCCCAAATATCAAACTAAAACGCCATGAAATTAAAAAGACAAGGAAGGAAATGAGATCCCGAGCATTCGCCAAGCCTTTGACACTACCCAGTATTGATTTAATGTACGCTGACTTGGAAAAAGTCAGCACTTTGTTCTCGAAAAAACAACTTTGTAAGAAAGTCAGCGAGTGGTTCTCAAGTTGGCGACCGTGGCAACAACGCATTTTGCTATGTAGTATGACCGAGAAATGCTCCAAAAGTCAGCTTCGTACTCTGGTGACATCTTTAGAGCCTGTTTTTCACAGGGATTTTGTGGCACAACTTAAAGGCTACCCTACAAAGCTCTTACAACCGAGATTTGTTCACACAATGTCAAGCATGGTTGAAAACAACGAATTTCTACGCTATCGTGGTTTAATTCCTTCCCAAACACAAACTAACGATTCTAAAGAAACTACTCCTTCTTTAGCGGAGTCCACAGAAACTCCGAAGTTCGACAGACTTGAGAAAGTTGTCGAAGTTGAAGATGAAAATTACGAAGCTTGTTATCACGAAGTAGCGGTTGAAGAAGGGATCGAATTTGACCATTATTCACAAGAAAATGACCTTCCTCTAGCTAGCTTTGCTGTTACGCCAGCTACTGAAGTTGGAGTTTATCCTTTAAGGCGACACGAACACGCTCCACCGTTTCTACGGAAAGTTAGCACACGAAATTTCTTCCCAGACGAAACTGGCACTGCCAAACTTGGCGTCATGAAAAGTGCGAGGAGAGGTGTTGATCAGGAGAAGGTTTTTGGGTCAGACCCTGTTACGTTTAAACCGTCAAAATGGTGGCAAGGACACCAAGGGACAAAATTACTAAAACCCAGAAGGAGTAGACtctcaaaatattttaaaatgcagTTGAATCAAATAAACCAGTGGCTAGAAGAGTGGTTGCAACATGAGAGAGTTGATATGCTGGCGGAGGTGGTCAAATGCTGTGATCCTGACTGTTTAAACTTCTTTGCCTTGTGTCTAAGCAGGAGGCTGAGAGATCAGACAGGGATAGACAGTCTTCCTGACCATATCCTTCACAAGGTATTCAATAACTTGGATGTTAGAAGTCTATGCAGAAGTTCACAGGTGTGTCACAGATGGAAGTATTTATGCCAAGATGCAACTATATGGCAAAAACGACTCAAAATAAGTGAGGGAGTGTTCAACCTGCCAAGGAAAATAGTAACACTTGCCAAGAATCAGCATGTCGACTGGAAACAGGCCTATGTAGAAGTGAGAAACCTTTTCAAAGATGCAGAAACAGTAGAGGGACAAGCGCTGCTACCCGGCCGTACAGGTaccattatcacaaccatcgtTATCGATGTTGTTGTGGTGAATGCAATCAATAATGTTGGGCCTGCCCAAACACCTACAACCGCTGACCAAAAGGTTCGTAAGTCACAATTCGAAAGCAAAGCCGAAGATAAGAACGATCTGACAGGAGGAAACCTGAAAATGCTTGCCAAAAGCTTGAGACTGTTACTGAGACAGAATGATAAACCACAGGAGGAGGAAGTAGCGTTGGATCTACGACCGGCGCTAGTACAAGCGTCTAATATGCTGGTAAATGATCATACCAAGTTTCGTTACCTGTCACTCGCCGTACAAGGTGTATTGGCCATCAAGAAAGTTACACGATTACAGGGTCATATGGATGGTGTGTACTGTCTACAGTTCGATACTCGACGGGTAATGACCGGCTCACTAGACAGAACCTTGAGAATATGGGATGTTAGGAGTGGAAAAAGTATCCATAAAATCAAAGGACATAGGGGTGGTATTCGCTGCCTTCAGTTTGACGACACCAAGATTATCACTGGATCCTGGGACATGACTATTATGGTATGGCATATCGTTCATTTCAATCGTCTGCATGTCTTGTATGGTCATAGGGGCTGTGTATCATGTTTACAATTCAATGACCAATTACTGGTTAGTGGATCTCATGACACGACTATTCGTATATGGGACGTGTCTACCTGGGAATGTCTCAATGATATCCAAGCACATGAAGGTAAATACTCCTGGTTTTTACCAtcatgttattgtcctattaaACTGAACAGAACGCTAAAGCACTGGGACGTAAACACTGGAGAGCTGATTCGAGTTTTCGATGGACATCAAGAAGCTGTTGCTTCTCTAAAGATTCTCAGTAAACTAGTAATGAGTGGATCTATCGATGGTATGTTAATGTTCTGGGATGTTGACACTGGTTACTGCGAGGCAGCTATACAAGCCCATGAAGGACCAGTGAATTCCATATCCACGTGTATGGAACACTTCATCTCTGCTGGAGGAGATAATCTAATCAAGGAATGGGACATGAGTACGTGTACATGTCTACGGACCCTACAGGGACATAAAGGTCCTGTACAGTGTGTCAGGGTAAGGTCCATATGCTACATAGAagagagagagagacaaTACGAGCAAGCAATTGAAACAGATACGAACATTTTAAAGCCGGGTTTCCTGTTCCCCGTTTAA

Transcript

ENSDTNT00000029307

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005381 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|F-box · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR051075 all species →	Family	SCF complex subunit WD repeat-containing protein	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19872 all species →	UBIQUITIN LIGASE SPECIFICITY FACTOR/HREP PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDTNP00000028014.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.