Gene detail

Detailed information of ENSDTNP00000028734.1 in Metridium senile

Genomic Location: not available for this species
NR annotation: XP_020912081.1, nucleolar protein 9 isoform X1 [Exaiptasia diaphana]
Species Metridium senile · all data for this species · gene families

Sequence

CDS

ENSDTNT00000030035

ATGAGTACACATACAGAAGAAAACCCGAACCCAATAGGCAAGCTAGATGAAGATACTGTAAGCTATTTTAAACGTGTTGAAAGTGTGactgaagatgatgattttgaagACGAAGAAGCAAAGCAACTGTTTCTCGAGAATGTCTTCACCCAGATTGAACATAACGAACTCGCTTTGTGTTGTGATCAGGGTATGAGCAGAGTGCTTGAGAGACTTATAATGTTCTTCAATGATGAACAGCTCAAAATAATATGGAAAAACCTAGCAAAAGACTTTAAAACTGTAACAACTGACCGATTCGGAAGTCACGTCATGCAAAATTTGGTTAACTCTATTCCAAATGCAATAAGAGTCGAAAGAAACAAATATAAGGGAAACATCGAGGAATCAATCGAACAGTCATTCCTATCATATTGTAGTTTTATTAGTGATAATCTACAAGACCTAATCGAAGATATGTATGGGTCTCACGTGATTCGGGCAGTGTTGGAGGTGCTTGGGGGTGTTCATATCTCGGAGACTGTCCAGAGGAGTAGAAACTCAAGAGGCTGTAGGGGGAAAGCATTTAATATGAAGGAAAGAAAATATGAGAAAGGCCATCCAGCAGGACAAGCATTTGGTATTTCATCAAGTCAAGCTATTGCAGTACCTGATAGTTTTGTGCCTGTTCTTCAGGACCTGACAGTGAGGGTACTGGATATGGATATAAACAACCTTGTATTTAGCCAACTCAGCTGTCCAGTTCTTCAAACACTTTTATTGGTACACCATGAAAATAACACTAAACTTTGCTCAAAACTCTGTAAAAAGGTTATGAACCTTGTAGACACAAGCCAAACAACAGTAATCGATGATGATGTGGAGGACAACAATAGCCAACAAAGCTACCAAATCCCATCACTCTTCACTGACAATGTTGGCAGCCATCTTGTTGAAAAAGTCTTGCTTGTTGCTCCTCCAAAACAGCACCAAAAGTTGTTTGAAAAGTTTTTTAAAGGTCACTTGACTGTCATTGCTTTGCATCCTGTGAGTAATTACTTAGTACAACACTTGTTGAAAAGTACTACTGACACTACCCTGGGTGGACTAATGCTGGATGAACTTCTTGATGAAATTGAAGACATTTTCTCATCAGGCCATGATGGTGTAATAGCCAGAATGGCAGAGCTTTCTGTACGTCTGCAGGTCAAGCAAGAAGAGCTTCAGCAAGCAATACTTGAAGCTTTCCACTGTACtgggaaaaaagaaagaaagaaatgtgCAGCTCTTATACTGTGTATGACAACCTATGATGTCCTGTATGGAGAAGATAACCAGGAAGCTAGCCATGGAGAGAATAAAAATGAACCAACAGAAACTAAAAATGAGGATGTGAAAAGTTCCCCGGTACTTACAAGAATCAATTACCATGGTGCAGTCTTGTTGAAAACACTCTTTGACTTCCAAAAACCCAAAGTATTTGTCAATGGTTTGTTGAGCATGAGTATGGAAGAGCTAACAAGAGCTTCTCGTGATTTTATTGGATCAAGAACTATAGAAGCTTTACTTAAAAGCCAAACAGTCAAAATTGACAAGAAAAATCAGTTTTGTGACATAATCAAGGGAGAATTTGCATCTTTGGCGTGTGACAAAAGTGCAAGTCATGTTGTTGAATCGTGCTGGAGAGAGGTGGACCATATTCACAAGGAACAAATTTCCAAGGAACTTGCAAATGAACAACATAAGCTTGCTAAGAATTTTTATGGCAGCAAAGTGCTGAAAAGTTGTGCTATCCAGACAGTTAGGAGCAATAATAAAAACATGGCAGATTTACAAGAAAAGGCCACCAGAAAGCGACAGAATTTCGAAGAGACCTTCAGAGCAACTGCCAAGAAGTCAAAGCTATCTGAAGAGCAGGAAAAAGAAAGCAATTCGAAAACAATGTATGCAATGGAAATGGCAGTGCTAGGGTTTGGACATGGGGACAaagataacaacaacagcaacatacGTCAAAAGAAATCAAAGAAACAGAAAGCAAAGACAACTGGAGAAGATGATATTGACATGATATTTCAATCCAAGAAACAATTAATAAAACCAAACTAA

Transcript

ENSDTNT00000030035

ACCACATGTTAATGATGGCGGACGTACTATAATTCTTTCTTTAATTTCACGTTTTTCTTCTGGACATTGCAGCCACAACATGAGTACACATACAGAAGAAAACCCGAACCCAATAGGCAAGCTAGATGAAGATACTGTAAGCTATTTTAAACGTGTTGAAAGTGTGactgaagatgatgattttgaagACGAAGAAGCAAAGCAACTGTTTCTCGAGAATGTCTTCACCCAGATTGAACATAACGAACTCGCTTTGTGTTGTGATCAGGGTATGAGCAGAGTGCTTGAGAGACTTATAATGTTCTTCAATGATGAACAGCTCAAAATAATATGGAAAAACCTAGCAAAAGACTTTAAAACTGTAACAACTGACCGATTCGGAAGTCACGTCATGCAAAATTTGGTTAACTCTATTCCAAATGCAATAAGAGTCGAAAGAAACAAATATAAGGGAAACATCGAGGAATCAATCGAACAGTCATTCCTATCATATTGTAGTTTTATTAGTGATAATCTACAAGACCTAATCGAAGATATGTATGGGTCTCACGTGATTCGGGCAGTGTTGGAGGTGCTTGGGGGTGTTCATATCTCGGAGACTGTCCAGAGGAGTAGAAACTCAAGAGGCTGTAGGGGGAAAGCATTTAATATGAAGGAAAGAAAATATGAGAAAGGCCATCCAGCAGGACAAGCATTTGGTATTTCATCAAGTCAAGCTATTGCAGTACCTGATAGTTTTGTGCCTGTTCTTCAGGACCTGACAGTGAGGGTACTGGATATGGATATAAACAACCTTGTATTTAGCCAACTCAGCTGTCCAGTTCTTCAAACACTTTTATTGGTACACCATGAAAATAACACTAAACTTTGCTCAAAACTCTGTAAAAAGGTTATGAACCTTGTAGACACAAGCCAAACAACAGTAATCGATGATGATGTGGAGGACAACAATAGCCAACAAAGCTACCAAATCCCATCACTCTTCACTGACAATGTTGGCAGCCATCTTGTTGAAAAAGTCTTGCTTGTTGCTCCTCCAAAACAGCACCAAAAGTTGTTTGAAAAGTTTTTTAAAGGTCACTTGACTGTCATTGCTTTGCATCCTGTGAGTAATTACTTAGTACAACACTTGTTGAAAAGTACTACTGACACTACCCTGGGTGGACTAATGCTGGATGAACTTCTTGATGAAATTGAAGACATTTTCTCATCAGGCCATGATGGTGTAATAGCCAGAATGGCAGAGCTTTCTGTACGTCTGCAGGTCAAGCAAGAAGAGCTTCAGCAAGCAATACTTGAAGCTTTCCACTGTACtgggaaaaaagaaagaaagaaatgtgCAGCTCTTATACTGTGTATGACAACCTATGATGTCCTGTATGGAGAAGATAACCAGGAAGCTAGCCATGGAGAGAATAAAAATGAACCAACAGAAACTAAAAATGAGGATGTGAAAAGTTCCCCGGTACTTACAAGAATCAATTACCATGGTGCAGTCTTGTTGAAAACACTCTTTGACTTCCAAAAACCCAAAGTATTTGTCAATGGTTTGTTGAGCATGAGTATGGAAGAGCTAACAAGAGCTTCTCGTGATTTTATTGGATCAAGAACTATAGAAGCTTTACTTAAAAGCCAAACAGTCAAAATTGACAAGAAAAATCAGTTTTGTGACATAATCAAGGGAGAATTTGCATCTTTGGCGTGTGACAAAAGTGCAAGTCATGTTGTTGAATCGTGCTGGAGAGAGGTGGACCATATTCACAAGGAACAAATTTCCAAGGAACTTGCAAATGAACAACATAAGCTTGCTAAGAATTTTTATGGCAGCAAAGTGCTGAAAAGTTGTGCTATCCAGACAGTTAGGAGCAATAATAAAAACATGGCAGATTTACAAGAAAAGGCCACCAGAAAGCGACAGAATTTCGAAGAGACCTTCAGAGCAACTGCCAAGAAGTCAAAGCTATCTGAAGAGCAGGAAAAAGAAAGCAATTCGAAAACAATGTATGCAATGGAAATGGCAGTGCTAGGGTTTGGACATGGGGACAaagataacaacaacagcaacatacGTCAAAAGAAATCAAAGAAACAGAAAGCAAAGACAACTGGAGAAGATGATATTGACATGATATTTCAATCCAAGAAACAATTAATAAAACCAAACTAAGGAAGTAGACATGGAATGTGAAATAAGGACTTTTGACCAACTAATGTAAACAGTTCATATTCACCATCAAAGTCAGTAGTTTTGACAATTATATTCAACAGCAAAATACGTCATATTTAGACTTCAGAGTTCAAATTATTATGTAGATATAAATTGAGTTGTTTCTATTATTCTCTAGCACAGTCCATGGGTAAAATAGCCTCCAAGTCGAAGTATCCTTGCCTGTCACAGCAGGACCCTTTGTTTTCTATCTCCTCTTCACTAGCATATAAACCTGGATAGCTCTTCTCAGGTAACAATGGCAGTCCAACCAAAAATTGACCTTCCTGAAAATGCCGCACTTGAAAGTAACCATGATGCGGTTGGTGTGTTTGTGAAGGAGCAGTTCTGTGTTCCCTAGGTAACATTCTAATTCGGCGCTGTTCATACTTTCCACTGGGAGTGAATATCGCTGGTAATGCAGCGGCTGGGTTTGTAGTGAGAAGACGAACTAGTCTCAAGTTATTTTCACCACTATGCTGTTTCTGTTGTCTTTGAGGGACACAGGCAGGGGTGACATTCTGTTTGACCGTTCGGTGAAATTGAGGCGCCGAGTTTCCTGCTTGTGGTAAACCCATTTTTTTCTTGCGCTGTTTGACaattttgacatcataatccTGGTGTACTTATTTTAAGCGCGCTCTGTGACGTCATCTTGAGTGCGCGCGCTGGTAGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6C9H2	Nucleolar protein 9 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=NOP9 PE=3 SV=1
C5MFB4	Nucleolar protein 9 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) OX=294747 GN=NOP9 PE=3 SV=1
B9W7H9	Nucleolar protein 9 OS=Candida dubliniensis (strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841) OX=573826 GN=NOP9 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006296 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00806 all species →	PUF	Pumilio-family RNA binding repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001313 all species →	Repeat	Pumilio RNA-binding repeat	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR040000 all species →	Family	Nucleolar protein 9	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13102 all species →	NUCLEOLAR PROTEIN 9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000056 all species →	Biological Process	ribosomal small subunit export from nucleus	Interproscan
GO:0000447 all species →	Biological Process	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000472 all species →	Biological Process	endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000480 all species →	Biological Process	endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan
GO:0030688 all species →	Cellular Component	preribosome, small subunit precursor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14790	NOP9; nucleolar protein 9	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.