Detailed information of ENSDTNP00000029216.1 in Metridium senile

Genomic Location: not available for this species
NR annotation: XP_020899186.2, THO complex subunit 6 homolog [Exaiptasia diaphana]
Species Metridium senile · all data for this species · gene families

 Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5XJS5THO complex subunit 6 homolog OS=Danio rerio OX=7955 GN=thoc6 PE=2 SV=1
Q86W42THO complex subunit 6 OS=Homo sapiens OX=9606 GN=THOC6 PE=1 SV=1
Q6AY87THO complex subunit 6 homolog OS=Rattus norvegicus OX=10116 GN=Thoc6 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005827 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan
PF12928
all species →		tRNA_int_end_N2tRNA-splicing endonuclease subunit sen54 N-termDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR042626
all species →		FamilyTHO complex subunit 6Interproscan
IPR024336
all species →		DomaintRNA-splicing endonuclease, subunit Sen54, N-terminalInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR44411
all species →		THO COMPLEX SUBUNIT 6 HOMOLOGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0000346
all species →		Cellular Componenttranscription export complexInterproscan
GO:0000347
all species →		Cellular ComponentTHO complexInterproscan
GO:0006406
all species →		Biological ProcessmRNA export from nucleusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSDTNP00000029216.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP