Detailed information of ENSDTNP00000029614.1 in Metridium senile

Genomic Location: chr6:16352700...16357350
NR annotation: XP_020897852.1, feline leukemia virus subgroup C receptor-related protein 1 [Exaiptasia diaphana]
Species Metridium senile · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9Y5Y0Choline/ethanolamine transporter FLVCR1 OS=Homo sapiens OX=9606 GN=FLVCR1 PE=1 SV=1
Q9N1F2Choline/ethanolamine transporter FLVCR1 OS=Felis catus OX=9685 GN=FLVCR1 PE=1 SV=1
A0A0R4ILB2Choline/ethanolamine transporter flvcr2a OS=Danio rerio OX=7955 GN=flvcr2a PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001268 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07690
all species →		MFS_1Major Facilitator SuperfamilyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011701
all species →		FamilyMajor facilitator superfamilyInterproscan
IPR036259
all species →		Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR049680
all species →		FamilySolute carrier family 49-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10924
all species →		MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0022857
all species →		Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085
all species →		Biological Processtransmembrane transportInterproscan
GO:0015232
all species →		Molecular Functionheme transmembrane transporter activityInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0020037
all species →		Molecular Functionheme bindingInterproscan
GO:0051184
all species →		Molecular Functionobsolete cofactor transmembrane transporter activityInterproscan
GO:0097037
all species →		Biological Processheme exportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSDTNP00000029614.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Metridium senile tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Metridium senile, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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